| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g006950.1 |
| Family | CBM22 |
| Protein Properties | Length: 565 Molecular Weight: 61788.6 Isoelectric Point: 5.0255 |
| Chromosome | Chromosome/Scaffold: 3 Start: 7161981 End: 7164481 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 12 | 161 | 8.7e-29 |
| NLIENSALEDGLSGWSPVGTCTALSVVEEEPAKVPTETINDVADGYRPSGRYILASGRADEADGLRRPIAAAALIKPRVTYRVAGWIALGGDGATAGDSH AVRVNLRLDDDDGCVVEGGAVCAEPGKWTEIKGAFRLKKSPCAAEVYVQG | |||
| GH10 | 218 | 506 | 0 |
| VMQMDSSFPFGTCINTNVIQNPAFVDFFTKHFDWAVFENELKWYHTEAQQGQLNYADSDALLDFCDRYGKPVRGHCIFWAVENTVQQWVKSLDADGLTAA VQERLTSLLTRYAGRFPHYDVNNEMLHGSYYQDRLGDDINAFMFRETARLDPGATLFVNDYNVEGGNDPNATPDKYIAQIAALQQKGAAVGGIGLQGHVT NPVGEVICDALDKLATTDLPVWLTELDVSESDVDLRAEDLEVVLREAYAHPAVEGVMFWGLMQGHMWRQDACLINADGTVNDAGERFVD | |||
| Full Sequence |
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| Protein Sequence Length: 565 Download |
| MACTQGVLFD VNLIENSALE DGLSGWSPVG TCTALSVVEE EPAKVPTETI NDVADGYRPS 60 GRYILASGRA DEADGLRRPI AAAALIKPRV TYRVAGWIAL GGDGATAGDS HAVRVNLRLD 120 DDDGCVVEGG AVCAEPGKWT EIKGAFRLKK SPCAAEVYVQ GAPPGVDVKV MDLQVFATDR 180 KARFRKLRKK TDKVRKRDVV LNFGSAAASG ISGASIRVMQ MDSSFPFGTC INTNVIQNPA 240 FVDFFTKHFD WAVFENELKW YHTEAQQGQL NYADSDALLD FCDRYGKPVR GHCIFWAVEN 300 TVQQWVKSLD ADGLTAAVQE RLTSLLTRYA GRFPHYDVNN EMLHGSYYQD RLGDDINAFM 360 FRETARLDPG ATLFVNDYNV EGGNDPNATP DKYIAQIAAL QQKGAAVGGI GLQGHVTNPV 420 GEVICDALDK LATTDLPVWL TELDVSESDV DLRAEDLEVV LREAYAHPAV EGVMFWGLMQ 480 GHMWRQDACL INADGTVNDA GERFVDLRRE WTSHARGHID SAGHFKFRGY HGTYVVQLAT 540 ATGKVHKTFS VEKGDTPLVL DMNL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 6.0e-7 | 11 | 164 | 157 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-36 | 247 | 486 | 260 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-74 | 223 | 506 | 307 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 8.0e-77 | 258 | 504 | 271 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28310.1 | 0 | 1 | 564 | 1 | 565 | unknown [Zea mays] |
| GenBank | EAY72426.1 | 0 | 1 | 564 | 1 | 557 | hypothetical protein OsI_00280 [Oryza sativa Indica Group] |
| RefSeq | NP_001041947.1 | 0 | 1 | 564 | 1 | 557 | Os01g0134900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147907.1 | 0 | 1 | 564 | 1 | 566 | LOC100281517 [Zea mays] |
| RefSeq | XP_002455241.1 | 0 | 1 | 564 | 1 | 564 | hypothetical protein SORBIDRAFT_03g006950 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 3e-30 | 227 | 498 | 18 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 4e-30 | 227 | 498 | 18 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 4e-30 | 227 | 498 | 18 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 1e-29 | 227 | 498 | 18 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1gor_A | 3e-29 | 227 | 498 | 18 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GT807565 | 233 | 333 | 565 | 0 |
| CB647597 | 283 | 97 | 379 | 0 |
| GO850973 | 330 | 146 | 475 | 0 |
| FL874412 | 253 | 217 | 469 | 0 |
| FL860597 | 241 | 278 | 515 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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