| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g006980.1 |
| Family | CBM22 |
| Protein Properties | Length: 595 Molecular Weight: 65026.9 Isoelectric Point: 6.1836 |
| Chromosome | Chromosome/Scaffold: 3 Start: 7193136 End: 7195960 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 28 | 186 | 2.1e-22 |
| CDSEDGCLAGWAPSGSCTLSAHAEDAPLPSLAATLAAAAADDDSDDEEVQQQRARKPSGRYVVAAHRASDTDGLCRALSRAPRPKVTYRVAGWVGVGTAV EGSHAVHVEVRVDDDGQGQHVGGGVAVVESGKWGEIKGSFRVDDDDEPPRHAKVYVHGP | |||
| GH10 | 246 | 530 | 0 |
| VIQVQNSVPIGTCITKAGMQNPEYVDFFTKHFDWAVLENELKWYYTEAVQGQVSYADADELINFCDRHGKPVRGHCIFWAVESSVQPWVRALNRDQLRAA VEARLRGLVSRYSGRFPHYEVNNEMLHGDFYAQRLGDDDINAHMFRETARIDPAPALFVNDYNVESGNDPNATPEKYVALVTDLQRRGAPVGGIGVQGHV THPVGDIICDALDKLAVTGLPVWITELDVSAADESVRADDLEIVLREAYAHPAVEGIMLWGFMQGHMWRSHGQLVNADGKYTQAG | |||
| Full Sequence |
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| Protein Sequence Length: 595 Download |
| MAFAEEETKT TTAAAAAHRG KNLIESSCDS EDGCLAGWAP SGSCTLSAHA EDAPLPSLAA 60 TLAAAAADDD SDDEEVQQQR ARKPSGRYVV AAHRASDTDG LCRALSRAPR PKVTYRVAGW 120 VGVGTAVEGS HAVHVEVRVD DDGQGQHVGG GVAVVESGKW GEIKGSFRVD DDDEPPRHAK 180 VYVHGPPAGV DLKVMDLLVS PVNKIPRLRH LRKKADKVRK RDVVLKVNRR TDGDTTESVA 240 GAHIQVIQVQ NSVPIGTCIT KAGMQNPEYV DFFTKHFDWA VLENELKWYY TEAVQGQVSY 300 ADADELINFC DRHGKPVRGH CIFWAVESSV QPWVRALNRD QLRAAVEARL RGLVSRYSGR 360 FPHYEVNNEM LHGDFYAQRL GDDDINAHMF RETARIDPAP ALFVNDYNVE SGNDPNATPE 420 KYVALVTDLQ RRGAPVGGIG VQGHVTHPVG DIICDALDKL AVTGLPVWIT ELDVSAADES 480 VRADDLEIVL REAYAHPAVE GIMLWGFMQG HMWRSHGQLV NADGKYTQAG NMFAGLRREW 540 TSHARGKVDG NGNFKFRGFH GTYQVLLTTA AGEVKKRTFD VNKGDAPLVL DMDF* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 5.0e-38 | 275 | 516 | 262 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-73 | 254 | 515 | 280 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-76 | 286 | 533 | 270 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF84241.1 | 0 | 1 | 594 | 1 | 591 | unknown [Zea mays] |
| GenBank | EAY72425.1 | 0 | 1 | 594 | 1 | 567 | hypothetical protein OsI_00279 [Oryza sativa Indica Group] |
| GenBank | EEE53821.1 | 0 | 40 | 594 | 39 | 575 | hypothetical protein OsJ_00270 [Oryza sativa Japonica Group] |
| RefSeq | NP_001147589.1 | 0 | 1 | 594 | 1 | 585 | endo-1,4-beta-xylanase [Zea mays] |
| RefSeq | XP_002455242.1 | 0 | 1 | 594 | 1 | 594 | hypothetical protein SORBIDRAFT_03g006980 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v0n_A | 8e-31 | 255 | 525 | 16 | 288 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1v0m_A | 8e-31 | 255 | 525 | 16 | 288 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1v0l_A | 8e-31 | 255 | 525 | 16 | 288 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1v0k_A | 8e-31 | 255 | 525 | 16 | 288 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1od8_A | 8e-31 | 255 | 525 | 16 | 288 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL874412 | 260 | 239 | 498 | 0 |
| FL875205 | 243 | 309 | 551 | 0 |
| EG387260 | 231 | 239 | 469 | 0 |
| CA254203 | 191 | 252 | 442 | 0 |
| GO850973 | 330 | 173 | 502 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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