| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g009790.1 |
| Family | CE8 |
| Protein Properties | Length: 598 Molecular Weight: 63916.2 Isoelectric Point: 8.0346 |
| Chromosome | Chromosome/Scaffold: 3 Start: 10560581 End: 10562545 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 286 | 579 | 0 |
| DVVVAQDGSGRYRTVSEAVARAPNHSKRKYVIYVKRGVYHENVEVRKKKTNIVIVGEGMGETVISGSRSFSSGWTTFRSATFAVAGAGFVARDLTFRNTA GPAAHQAVALRVDSDRSAFFRVAVEGHQDTLYAHSLRQLYRDCRVAGTVDFVFGNGIVVVQRSLVATLPLAPGQTGSVTAQGRKDPNQNTGFSFHGCVVE GKYPTYLGRPWKPFSRVVVMESYLGPGIQARGWLEWAAAGSGDHSTGLATLFYGEYKNYGPGAGVAGRVKWPGYHVIMDAAVASRFTVRRFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 598 Download |
| MASSTSATSC PCLLLTLLVL LLLMVMARRA DASAVFAGLS FESPGEAEAF EDALLRQACV 60 NVSFLSGGRD REACVSRLDT ARGGAGSGPV PVLRAALRDT LGEAVGAVRA VRGLASLSNR 120 PREEMAVRDC VELLGYSVDE LGWALDAMAE TDTETDASGG GSAARRAEDD LHAWLSAALG 180 NQDTCVEGFH GTDGRLLHRV EAAVAQLTQL VSNLLAMHKR LRSITPLLHH GPPTNKNNGT 240 SGGGAGDELP PWVMDIEVDD GDKQDQDEEE LVAKRARAGR VSTRVDVVVA QDGSGRYRTV 300 SEAVARAPNH SKRKYVIYVK RGVYHENVEV RKKKTNIVIV GEGMGETVIS GSRSFSSGWT 360 TFRSATFAVA GAGFVARDLT FRNTAGPAAH QAVALRVDSD RSAFFRVAVE GHQDTLYAHS 420 LRQLYRDCRV AGTVDFVFGN GIVVVQRSLV ATLPLAPGQT GSVTAQGRKD PNQNTGFSFH 480 GCVVEGKYPT YLGRPWKPFS RVVVMESYLG PGIQARGWLE WAAAGSGDHS TGLATLFYGE 540 YKNYGPGAGV AGRVKWPGYH VIMDAAVASR FTVRRFIDGL AWLPGTGITF TADLFRK* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 3.0e-136 | 25 | 594 | 588 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 2.0e-141 | 118 | 594 | 487 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 1.0e-158 | 115 | 594 | 491 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 6.0e-170 | 286 | 579 | 304 | + Pectinesterase. | ||
| PLN02506 | PLN02506 | 0 | 53 | 594 | 543 | + putative pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001042618.1 | 0 | 35 | 597 | 27 | 611 | Os01g0254300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130602.1 | 0 | 29 | 597 | 29 | 595 | hypothetical protein LOC100191701 [Zea mays] |
| RefSeq | XP_002330224.1 | 0 | 57 | 594 | 2 | 500 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002457581.1 | 0 | 1 | 597 | 1 | 597 | hypothetical protein SORBIDRAFT_03g009790 [Sorghum bicolor] |
| RefSeq | XP_002512462.1 | 0 | 54 | 594 | 34 | 533 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 286 | 595 | 4 | 316 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 286 | 594 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 5e-20 | 282 | 551 | 1 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 5e-20 | 282 | 551 | 1 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 6e-20 | 282 | 551 | 1 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
