| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g010200.1 |
| Family | GT4 |
| Protein Properties | Length: 474 Molecular Weight: 51934.2 Isoelectric Point: 9.817 |
| Chromosome | Chromosome/Scaffold: 3 Start: 11035910 End: 11041228 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 272 | 436 | 2.2e-21 |
| DLLFAIINSVSRGKGQDLFLQAFYQGLQLIQHQKLKVPTMHAIVVGSDMNAQTKFETQLRDFVVKNAIHDRVHFVNKTLAVAPYLAAIDVLVQNSQARGE CFGRITIEAMAFKLPVLGTAAGGTTEIVLDGSTGLLHPAGKEGVTPLAKNIVRLASHAEQRVSMG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 474 Download |
| MAKPPSSAAA AAAGGRGPVH NRTRLLLVLL VAVAASASTA GFLLRGALRD PCDGRGDPAA 60 LNTAVAAGSP LGFMRSKLVL LVSHELSLSG GPLLLMELAF LLRHVGSEVV WITNQRSEET 120 NDVTYSLEHR MLSHGVQVLP ARGQEAVDIA LKADLVILNT AVAGKWLDPV LKDHVPKVLP 180 KILWWIHEMR GHYFKVEYVK HLPFVAGAMI DSHTTAEYWK SRTSDRLKIQ MPQTYVVHLG 240 NSKELMEVAE DNVARRVLRE HIRESLGVRS EDLLFAIINS VSRGKGQDLF LQAFYQGLQL 300 IQHQKLKVPT MHAIVVGSDM NAQTKFETQL RDFVVKNAIH DRVHFVNKTL AVAPYLAAID 360 VLVQNSQARG ECFGRITIEA MAFKLPVLGT AAGGTTEIVL DGSTGLLHPA GKEGVTPLAK 420 NIVRLASHAE QRVSMGEKGY DRVKEMFMEH HMAERIAAVL KEVLQKSQER SRS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03819 | GT1_WavL_like | 3.0e-17 | 281 | 447 | 168 | + This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. | ||
| COG0438 | RfaG | 2.0e-18 | 271 | 467 | 199 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| cd03798 | GT1_wlbH_like | 3.0e-20 | 285 | 463 | 183 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03808 | GT1_cap1E_like | 2.0e-22 | 285 | 458 | 175 | + This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. | ||
| cd03801 | GT1_YqgM_like | 1.0e-26 | 90 | 461 | 389 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19755.1 | 0 | 20 | 473 | 12 | 463 | unnamed protein product [Vitis vinifera] |
| GenBank | EAY73392.1 | 0 | 1 | 473 | 1 | 482 | hypothetical protein OsI_01273 [Oryza sativa Indica Group] |
| RefSeq | NP_001042653.1 | 0 | 1 | 473 | 1 | 482 | Os01g0262600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130447.1 | 0 | 137 | 473 | 63 | 399 | hypothetical protein LOC100191545 [Zea mays] |
| RefSeq | XP_002327680.1 | 0 | 13 | 473 | 11 | 481 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jjm_L | 0.00000000007 | 334 | 468 | 259 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_K | 0.00000000007 | 334 | 468 | 259 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_J | 0.00000000007 | 334 | 468 | 259 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_I | 0.00000000007 | 334 | 468 | 259 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_H | 0.00000000007 | 334 | 468 | 259 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
