| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g012280.1 |
| Family | GH28 |
| Protein Properties | Length: 507 Molecular Weight: 52652.9 Isoelectric Point: 7.0332 |
| Chromosome | Chromosome/Scaffold: 3 Start: 14099553 End: 14101489 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 132 | 474 | 0 |
| WDTACQDDGDSVVLAAAGYSFLVHSTVFTGPCQGSVTIQLDGTIVAPSDPDKWPANSKRNWLLFYQAHGMSLKGAGLIDGKGQKWWELPCKSQKGHGGSS GHGAACDSPVAMRFFMTNNVTLQGLKVQNSPEFHIRFDSCRGVVASGLSISSPALSPNTDGIHVENSQDVVITNTAVSNGDDCVSIGAGTLNMHVENVTC GPGGHGISIGSLGKQGSRACVANVTVRNAVIRHSDNGVRIKTWQGGSGAVSAVSFENVRMDAVRNPIIIDQYYCLSKSCENATSAVFVNGVSYAGIRGTY DARTPPIHFGCSDAVPCTNITLSDVELLPASGETIDDPFCWNV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 507 Download |
| MEFTARTRTA IALLLSLAAF SSFLCGGVQG GRHHHHHAKH TKHNSARPPS AHAPGPASGG 60 RRHASPPPHA RRPVSPPAPP PSSSGGYPTP GAAAPEPAPA PAAAGSVYDV VKDFGAVGDG 120 VTDDTDAVKT AWDTACQDDG DSVVLAAAGY SFLVHSTVFT GPCQGSVTIQ LDGTIVAPSD 180 PDKWPANSKR NWLLFYQAHG MSLKGAGLID GKGQKWWELP CKSQKGHGGS SGHGAACDSP 240 VAMRFFMTNN VTLQGLKVQN SPEFHIRFDS CRGVVASGLS ISSPALSPNT DGIHVENSQD 300 VVITNTAVSN GDDCVSIGAG TLNMHVENVT CGPGGHGISI GSLGKQGSRA CVANVTVRNA 360 VIRHSDNGVR IKTWQGGSGA VSAVSFENVR MDAVRNPIII DQYYCLSKSC ENATSAVFVN 420 GVSYAGIRGT YDARTPPIHF GCSDAVPCTN ITLSDVELLP ASGETIDDPF CWNVYGSAAT 480 PTVPPVPCLM EGVPRNVEDN SSLKCY* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-67 | 151 | 488 | 343 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-72 | 136 | 489 | 360 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-78 | 136 | 458 | 325 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-84 | 136 | 458 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-111 | 136 | 489 | 355 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD86981.1 | 0 | 106 | 506 | 16 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAY73623.1 | 0 | 21 | 506 | 22 | 503 | hypothetical protein OsI_01510 [Oryza sativa Indica Group] |
| RefSeq | NP_001042805.1 | 0 | 35 | 506 | 36 | 503 | Os01g0296200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150436.1 | 0 | 1 | 506 | 1 | 499 | polygalacturonase [Zea mays] |
| RefSeq | XP_002455500.1 | 0 | 1 | 506 | 1 | 506 | hypothetical protein SORBIDRAFT_03g012280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-22 | 201 | 474 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-22 | 201 | 474 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-22 | 201 | 474 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-22 | 201 | 474 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-22 | 201 | 474 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
