| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g012290.1 |
| Family | GH3 |
| Protein Properties | Length: 826 Molecular Weight: 88145.1 Isoelectric Point: 5.2498 |
| Chromosome | Chromosome/Scaffold: 3 Start: 14156267 End: 14158959 |
| Description | beta-xylosidase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 101 | 361 | 0 |
| GAPRVGLPPYKWWGEALHGVSDVGPGGTWFGDVVPGATSFPLVINSAAAFNESLWRAIGGVVSTEIRAMYNLGHAELTYWSPNINVVRDPRWGRASETPG EDPFVVGRYAVNFVRGMQDVVIAAGAAATADPFSRPIKVSSCCKHFAAYDVDAWFKADRLTFDAQVEERDMVETFERPFEMCIRDGDASCVMCSYNRING IPACADARLLSETVRSQWQLHGYIVSDCDSVRVMVRDAKWLNYTGVEATAAAMKAGLDLDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 826 Download |
| MASASSILVA LLCAIAAAAV SSSAAAAAGS GGAGGGLGPI STNGRNYTKV CDPVRFAALG 60 LDMSRFRYCD ASLPYAERVR DLVGRLSLEE KVRNLGDQAE GAPRVGLPPY KWWGEALHGV 120 SDVGPGGTWF GDVVPGATSF PLVINSAAAF NESLWRAIGG VVSTEIRAMY NLGHAELTYW 180 SPNINVVRDP RWGRASETPG EDPFVVGRYA VNFVRGMQDV VIAAGAAATA DPFSRPIKVS 240 SCCKHFAAYD VDAWFKADRL TFDAQVEERD MVETFERPFE MCIRDGDASC VMCSYNRING 300 IPACADARLL SETVRSQWQL HGYIVSDCDS VRVMVRDAKW LNYTGVEATA AAMKAGLDLD 360 CGMFWEGARD FFTTYGVDAV RQGKIKEADV DNALGNVYTT LMRLGFFDGM PEFESLGADD 420 VCTRDHKELA ADAARQGMVL LKNDARRLPL DPSKINSVSL VGLLEHINAT DVMLGDYRGK 480 PCRIVTPYDA IRQVVNATYV HACDSGACST AEGMGRASRT AKIADATIVI AGLNMSVERE 540 SNDREDLLLP WNQSSWINAV AEASTTPIVL VIMSAGGVDV SFAQNNTKIG AIVWAGYPGE 600 EGGTAIADVL FGKYNPGGRL PLTWFKNEYV NQIPMTSMAL RPDAAHGYPG RTYKFYGGPA 660 VLYPFGHGLS YTSFTYASGT TGATVTIPIG AWEHCKMLTY KSGKAPSPSP ACPALNVASH 720 RCDEVVSFSL RVANTGGVGG DHVVPVYTAP PPEVGDAPRK QLVEFRRVFV PAGAAVDVPF 780 ALNVCKTFAI VEETAYTVVP SGVSTVIVGD DALALSFAVT INLAV* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 2.0e-43 | 90 | 481 | 397 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 6.0e-49 | 90 | 400 | 312 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| pfam01915 | Glyco_hydro_3_C | 6.0e-57 | 438 | 672 | 241 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 2.0e-66 | 132 | 784 | 694 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 64 | 816 | 770 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB55751.1 | 0 | 35 | 823 | 31 | 814 | putative alpha-L-arabinofuranosidase/beta-D- xylosidase isoenzyme ARA-I [Oryza sativa Japonica Group] |
| GenBank | EEE54394.1 | 0 | 35 | 823 | 31 | 772 | hypothetical protein OsJ_01415 [Oryza sativa Japonica Group] |
| RefSeq | NP_001068511.1 | 0 | 9 | 825 | 14 | 816 | Os11g0696400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146482.1 | 0 | 39 | 825 | 51 | 835 | hypothetical protein LOC100280070 [Zea mays] |
| RefSeq | XP_002455502.1 | 0 | 1 | 825 | 1 | 825 | hypothetical protein SORBIDRAFT_03g012290 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 1.4013e-45 | 180 | 782 | 128 | 696 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3u48_A | 1.4013e-45 | 180 | 782 | 128 | 696 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3u4a_B | 7.00649e-45 | 180 | 782 | 128 | 696 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3u4a_A | 7.00649e-45 | 180 | 782 | 128 | 696 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3zz1_A | 3e-37 | 136 | 824 | 71 | 713 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
