Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb03g012410.1 |
Family | CE8 |
Protein Properties | Length: 339 Molecular Weight: 36545.1 Isoelectric Point: 6.9013 |
Chromosome | Chromosome/Scaffold: 3 Start: 14369277 End: 14370695 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 43 | 327 | 0 |
IFVNRKGGADFTSVQDAVDSVPLGNDQWIRVHVAAGVYNEKVMIPQNKSFILLEGEGWQQTSIEWADHAGGDSSTAATPTFAAYSADFMARDIAFKNTYN GAGGTTTIAPAVAALVAGDRSSFYRCGFVSVQDTLSDIQGRHYYEGCHIQGAMDFIFGNGQSIFQGCEIWTARTPVWPGFITAQGRVSEADTSGFVFKGC TVRGVTPAYLGRAWRRYARVIFYQTDMSGVVSQGWDAWGYKGTEGTLTMVEEGCTGQGSNRTGRVPWTKDLSGAELAKFVDLSYV |
Full Sequence |
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Protein Sequence Length: 339 Download |
MTRLRLGPPL FKMALAVLAA VLASMAPRGR CDDAARSVVA RSIFVNRKGG ADFTSVQDAV 60 DSVPLGNDQW IRVHVAAGVY NEKVMIPQNK SFILLEGEGW QQTSIEWADH AGGDSSTAAT 120 PTFAAYSADF MARDIAFKNT YNGAGGTTTI APAVAALVAG DRSSFYRCGF VSVQDTLSDI 180 QGRHYYEGCH IQGAMDFIFG NGQSIFQGCE IWTARTPVWP GFITAQGRVS EADTSGFVFK 240 GCTVRGVTPA YLGRAWRRYA RVIFYQTDMS GVVSQGWDAW GYKGTEGTLT MVEEGCTGQG 300 SNRTGRVPWT KDLSGAELAK FVDLSYVSAD GWLDAQPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-80 | 33 | 333 | 302 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 6.0e-83 | 34 | 333 | 312 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-90 | 41 | 335 | 299 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 4.0e-97 | 33 | 337 | 312 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 4.0e-117 | 38 | 337 | 306 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 32 | 337 | 34 | 341 | unnamed protein product [Vitis vinifera] |
GenBank | EAY73651.1 | 0 | 31 | 338 | 28 | 335 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
RefSeq | XP_002263748.1 | 0 | 38 | 337 | 27 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 43 | 337 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002455508.1 | 0 | 1 | 338 | 1 | 338 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.99756e-43 | 37 | 335 | 3 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-30 | 38 | 309 | 1 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 0.000000000000007 | 50 | 287 | 15 | 289 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000000007 | 50 | 287 | 15 | 289 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.000000000000007 | 50 | 287 | 15 | 289 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |