| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g012820.1 |
| Family | CE8 |
| Protein Properties | Length: 566 Molecular Weight: 59377.9 Isoelectric Point: 7.0589 |
| Chromosome | Chromosome/Scaffold: 3 Start: 15462076 End: 15464211 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 249 | 546 | 0 |
| VTVDPSGAGNYSTIGEAVAAAPTNLGGSTGYFVIRVPAGVYQENVVVPKNKKYVMMIGDGIGLSVVTGNRSVVDGWTTFNSATFAVVGTGFVAVNMTFRN TAGPAKHQAVALRSGADLSTFYQCSFEAYQDTLYTHSLRQFYRGCDVYGTVDYVFGNAAVVFQDCNLYSRLPMQGQSNTVTAQGRTDPNQNTGTTLQGCT VAAAPELAANTAFAVATYLGRPWKLYSRTVIMQSEVDALVDPAGWMPWDGDYALSTLFYAEYNNSGPGADTSRRVAWPGFHVLNGTADAANFTVGNMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 566 Download |
| MAAAAFHTTT AALSAILALL LSLSLLVAVV RSDTAATPVT PSTACNETTD PNFCRTVLPS 60 NGTSNLYTYG RFSVAKSLAN ANKFLGLVNR YLTRGGGGLS PGAVAALQDC QLLSGLNIDF 120 LSSAGATLNT SGNSTLLDPQ AEDVQTLLSA ILTNQQTCAD GLQVAAAAWS VRNGLAVPMV 180 NSTKLYSVSL SLFTRAWVRS SAKANKSKSK PPRHGGGHGR GLFDATDDEM VRRMALDGVA 240 AAVSVVGEVT VDPSGAGNYS TIGEAVAAAP TNLGGSTGYF VIRVPAGVYQ ENVVVPKNKK 300 YVMMIGDGIG LSVVTGNRSV VDGWTTFNSA TFAVVGTGFV AVNMTFRNTA GPAKHQAVAL 360 RSGADLSTFY QCSFEAYQDT LYTHSLRQFY RGCDVYGTVD YVFGNAAVVF QDCNLYSRLP 420 MQGQSNTVTA QGRTDPNQNT GTTLQGCTVA AAPELAANTA FAVATYLGRP WKLYSRTVIM 480 QSEVDALVDP AGWMPWDGDY ALSTLFYAEY NNSGPGADTS RRVAWPGFHV LNGTADAANF 540 TVGNMVLGDF WLPQTGVPFT SGLIN* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03043 | PLN03043 | 1.0e-27 | 40 | 196 | 161 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| PLN02301 | PLN02301 | 3.0e-146 | 38 | 563 | 531 | + pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 6.0e-163 | 253 | 564 | 312 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| PLN02713 | PLN02713 | 0 | 31 | 565 | 549 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 255 | 549 | 295 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY73715.1 | 0 | 42 | 563 | 38 | 518 | hypothetical protein OsI_01593 [Oryza sativa Indica Group] |
| GenBank | EAZ11620.1 | 0 | 42 | 563 | 38 | 530 | hypothetical protein OsJ_01484 [Oryza sativa Japonica Group] |
| RefSeq | NP_001042865.1 | 0 | 42 | 563 | 38 | 556 | Os01g0311800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002440965.1 | 0 | 33 | 565 | 25 | 573 | hypothetical protein SORBIDRAFT_09g017920 [Sorghum bicolor] |
| RefSeq | XP_002457749.1 | 0 | 1 | 565 | 1 | 565 | hypothetical protein SORBIDRAFT_03g012820 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 244 | 563 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 245 | 565 | 1 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-17 | 249 | 471 | 8 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-17 | 249 | 471 | 8 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 3e-17 | 249 | 471 | 8 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
