| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g012830.1 |
| Family | CE8 |
| Protein Properties | Length: 577 Molecular Weight: 61537.7 Isoelectric Point: 8.2372 |
| Chromosome | Chromosome/Scaffold: 3 Start: 15473094 End: 15480705 |
| Description | pectin methylesterase 2 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 266 | 561 | 0 |
| AVVAKDGSGGYTTVSAAVAAAPTNSKKRYVIYIKAGAYMENVEVGKKHVNLMFVGDGIGKTVIKASRNVVDGYTTFRSATVAVVGNNFLARDLTIENSAG PSKHQAVALRVGADLSAFYRCSFVGYQDTLYVHSLRQFFRDCDIYGTIDFVFGNAAVVLQGCNLYARKPLPNQSNIFTAQGREDPNQNTGISIHRCKVAA AADLLQSSSSTKTYLGRPWKQYSRTVFLQSELDSLIAPAGWLEWDGNFALDTLYYGEYMNTGPGAGTSGRVKWKGYRVITSAAEASAFTVGSFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 577 Download |
| MPPIPKRAEH LLVLLIVAFA AAAATSAASN DAGTVPFYPS AEAAAAAHCD GTLYPELCLS 60 TLADIPDLHK KPLPDVICAA VNHTEDVVTA TSTNCSYYLQ DRSLSARDRL AINDCLELLS 120 TTMDELRATT ADLSTSSGGN GSAAAPSVGT RRVTMDHVMT VLSAAITNQY TCLDGFAYQN 180 GGRVRHYIEP TFHHVSRMVS NSLAMAKKLP GASPSPSSAP TTTETAAVAR QPFMGYGQMV 240 KGFPRWVRPG DRRLLQAPAT AITADAVVAK DGSGGYTTVS AAVAAAPTNS KKRYVIYIKA 300 GAYMENVEVG KKHVNLMFVG DGIGKTVIKA SRNVVDGYTT FRSATVAVVG NNFLARDLTI 360 ENSAGPSKHQ AVALRVGADL SAFYRCSFVG YQDTLYVHSL RQFFRDCDIY GTIDFVFGNA 420 AVVLQGCNLY ARKPLPNQSN IFTAQGREDP NQNTGISIHR CKVAAAADLL QSSSSTKTYL 480 GRPWKQYSRT VFLQSELDSL IAPAGWLEWD GNFALDTLYY GEYMNTGPGA GTSGRVKWKG 540 YRVITSAAEA SAFTVGSFID GDVWLAGTSI PFTTGL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02933 | PLN02933 | 3.0e-170 | 71 | 576 | 516 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 1.0e-179 | 49 | 576 | 537 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02313 | PLN02313 | 7.0e-180 | 39 | 576 | 543 | + Pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 265 | 562 | 298 | + Pectinesterase. | ||
| PLN02484 | PLN02484 | 0 | 49 | 576 | 533 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC70505.1 | 0 | 34 | 576 | 34 | 565 | hypothetical protein OsI_01594 [Oryza sativa Indica Group] |
| GenBank | EEE54425.1 | 0 | 34 | 576 | 34 | 584 | hypothetical protein OsJ_01485 [Oryza sativa Japonica Group] |
| RefSeq | NP_001042866.1 | 0 | 159 | 576 | 1 | 426 | Os01g0312500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146685.1 | 0 | 1 | 576 | 1 | 563 | hypothetical protein LOC100280285 [Zea mays] |
| RefSeq | XP_002455538.1 | 0 | 1 | 576 | 1 | 576 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 259 | 576 | 2 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 262 | 576 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 4e-24 | 261 | 550 | 1 | 326 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 4e-24 | 261 | 550 | 1 | 326 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 6e-24 | 261 | 550 | 1 | 326 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
