| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g013310.1 |
| Family | GH28 |
| Protein Properties | Length: 694 Molecular Weight: 71920 Isoelectric Point: 7.6291 |
| Chromosome | Chromosome/Scaffold: 3 Start: 16364456 End: 16366916 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 287 | 641 | 0 |
| KAACSSNTTTATLLVPSDGVFTISSTIFAGPCKSALTFQIDGVLMPPDGPASWPASDSRKQWIVFYKADGMTLAGEGTIEGNGEEWWDLPCKPHRGPNGS TLPGPCDSPAVSKLADHMDFTLFFVHVLGLTLFLLVRFFSSNDVAVRGLRIENSPQFHLKFDACDRVRVDGLFVSSPASSPNTDGVHVENTTSVQILNSR IYNGDDCVSIGAGCSDVHIENITCGHGHGISIGSLGVHNTRACVSNVTVRNARIVDSDNGVRIKTWQGGTGAVSAVEFAGVQMQNVKNCIVIDQYYCLGS GCANQTSAVRVAGVTYRDIRGTYNPQAAGAPIRLACSDAVACTDITMSGVELLPA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 694 Download |
| MALLCFLVVV GADASRSLHC HRKHQRHHHG HHRTENYSHV SMPPVAPPPD VDGDSPAEPP 60 GLPPAVGGAL PPCSCHDKPC LSPIKEPAGA PSTTPTSSAK PPHFSLANPP SPAPATAPSH 120 SPLNPPSSHQ APSKPPASSL AKPPSSAPVP DIAPSHSHAK PPSSYATRTP SQPPKRAPEP 180 AHPPAESKAP RLAPAKQPPA PSPSPSAAQP PRCSTANHPS LAPTASAKPP AHPPAAASKP 240 IPPPPPALPP AAKNSSSGWG NVFDVRAFGA SGNASGNDTR AFRAAWKAAC SSNTTTATLL 300 VPSDGVFTIS STIFAGPCKS ALTFQIDGVL MPPDGPASWP ASDSRKQWIV FYKADGMTLA 360 GEGTIEGNGE EWWDLPCKPH RGPNGSTLPG PCDSPAVSKL ADHMDFTLFF VHVLGLTLFL 420 LVRFFSSNDV AVRGLRIENS PQFHLKFDAC DRVRVDGLFV SSPASSPNTD GVHVENTTSV 480 QILNSRIYNG DDCVSIGAGC SDVHIENITC GHGHGISIGS LGVHNTRACV SNVTVRNARI 540 VDSDNGVRIK TWQGGTGAVS AVEFAGVQMQ NVKNCIVIDQ YYCLGSGCAN QTSAVRVAGV 600 TYRDIRGTYN PQAAGAPIRL ACSDAVACTD ITMSGVELLP ASGGGGGGGR AGALLADPYC 660 WNAYGVMETL TLPPVYCLQE GRPESLQDQL TSC* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-59 | 260 | 637 | 380 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-62 | 263 | 637 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 6.0e-78 | 265 | 636 | 376 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-80 | 292 | 636 | 345 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-89 | 262 | 674 | 414 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001132604.2 | 0.006 | 1 | 72 | 32 | 91 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | NP_001132604.2 | 0 | 220 | 693 | 69 | 502 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | XP_002455572.1 | 0 | 1 | 693 | 1 | 693 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
| RefSeq | XP_002455574.1 | 0 | 224 | 693 | 66 | 548 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 6e-26 | 346 | 638 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 6e-26 | 346 | 638 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 6e-26 | 346 | 638 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 6e-26 | 346 | 638 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 6e-26 | 346 | 638 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
