| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g013330.1 |
| Family | GH28 |
| Protein Properties | Length: 549 Molecular Weight: 58172.1 Isoelectric Point: 5.5041 |
| Chromosome | Chromosome/Scaffold: 3 Start: 16404565 End: 16406715 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 376 | 503 | 2.6e-33 |
| HRRSIGSLGVHNTHACVSNITVRNARILDSDNGLRIKTWQGGTGAVTAVEFAGVQMQNVKSCIVIDQYYCLGHGCANQTSAVRVAGVTYRDIHGTYNPQA GAPIRLACSDAVACTDITMSGVELLPAG | |||
| GH28 | 146 | 351 | 0 |
| AACSSDSATATLLVPSDGVFTITSTIFSGPCKPDLTFQIDGVLMPPDGPASWPATDSRKQWIVFYKADRLTLAGEGTIEGNGEEWWDLPCKPHRGPNGST LPGPCDSPALIRFFLSNDVTVCGLRIENSPQFHLRFDDCERVRVDGLFVSSPASSPNTDGVHVENTTSVQILNSRIYNGDDCVSIGAGCSDVHVENITCG HGHGIR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 549 Download |
| MMRPAPETST RPQLRRRRRP RPVPLVTVVV SVALVSLLCL PVAADASRAL HHNNREQHRG 60 HQNHRTTENK KNSHVSLPPD ADGGDSPPEP PEADGGAPPP PLPPPPPEGD DDCGDVFDVR 120 AFGASGGDGG SCGDDDTPAF RAAWKAACSS DSATATLLVP SDGVFTITST IFSGPCKPDL 180 TFQIDGVLMP PDGPASWPAT DSRKQWIVFY KADRLTLAGE GTIEGNGEEW WDLPCKPHRG 240 PNGSTLPGPC DSPALIRFFL SNDVTVCGLR IENSPQFHLR FDDCERVRVD GLFVSSPASS 300 PNTDGVHVEN TTSVQILNSR IYNGDDCVSI GAGCSDVHVE NITCGHGHGI RYLSVSHSAT 360 CFHGGTSPDA AKLCSHRRSI GSLGVHNTHA CVSNITVRNA RILDSDNGLR IKTWQGGTGA 420 VTAVEFAGVQ MQNVKSCIVI DQYYCLGHGC ANQTSAVRVA GVTYRDIHGT YNPQAGAPIR 480 LACSDAVACT DITMSGVELL PAGGDEGALL ADPYCWNAYG VMETLTLPPV YCLLEGSPES 540 LQDPLTSC* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-58 | 139 | 506 | 371 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-60 | 139 | 548 | 417 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 4.0e-77 | 137 | 499 | 368 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-85 | 148 | 513 | 366 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-94 | 137 | 529 | 395 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN29256.1 | 0 | 189 | 548 | 1 | 332 | unknown [Zea mays] |
| RefSeq | NP_001042921.1 | 0 | 115 | 548 | 344 | 759 | Os01g0329300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001132604.2 | 0 | 2 | 548 | 1 | 502 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | XP_002455572.1 | 0 | 114 | 548 | 260 | 693 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
| RefSeq | XP_002455574.1 | 0 | 1 | 548 | 1 | 548 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 1e-21 | 146 | 499 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-21 | 146 | 499 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-21 | 146 | 499 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-21 | 146 | 499 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 1e-21 | 146 | 499 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
