y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb03g022950.1 |
Family | CE8 |
Protein Properties | Length: 347 Molecular Weight: 37953.1 Isoelectric Point: 8.1934 |
Chromosome | Chromosome/Scaffold: 3 Start: 45577909 End: 45579526 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 60 | 336 | 0 |
EEFKTVQSAIDAVPAGNTEWIIVHLRSGLHRGKVIIPENKPFIFVRGNGKGRTSISHESASSDNAESAAFTVSADNVVVFGVSFRNSARVGLVNDPEIRS VAAMVEGDKVAFYHCAFYSPHHTLFDSAGRHYYESCYIQGNIDFIFGNGQSMFQCPEIFVKPDRRTEIRGSITAQVREEEDTTGFVFLKGKVYGVGEVYL GRVTAPDSRVIFSDTYLSRTVNAAGWTTIGYTGSTDKVMLAEFNCTGPGADVTNRVPWSRRFSQNDAAKYLTIDFIN |
Full Sequence |
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Protein Sequence Length: 347 Download |
MARPCLLPFL VAAAAVLITW APGGALGKSK FAKKSDDVVN GPLLTDKIKA KKTLIVGPDE 60 EFKTVQSAID AVPAGNTEWI IVHLRSGLHR GKVIIPENKP FIFVRGNGKG RTSISHESAS 120 SDNAESAAFT VSADNVVVFG VSFRNSARVG LVNDPEIRSV AAMVEGDKVA FYHCAFYSPH 180 HTLFDSAGRH YYESCYIQGN IDFIFGNGQS MFQCPEIFVK PDRRTEIRGS ITAQVREEED 240 TTGFVFLKGK VYGVGEVYLG RVTAPDSRVI FSDTYLSRTV NAAGWTTIGY TGSTDKVMLA 300 EFNCTGPGAD VTNRVPWSRR FSQNDAAKYL TIDFINGKEW LPAYYY* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 1.0e-62 | 47 | 342 | 310 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 4.0e-63 | 52 | 341 | 299 | + putative pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-66 | 61 | 341 | 283 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 7.0e-80 | 62 | 341 | 284 | + probable pectinesterase | ||
PLN02480 | PLN02480 | 0 | 1 | 345 | 347 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 1 | 344 | 1 | 345 | unknown [Glycine max] |
GenBank | EAZ26679.1 | 0 | 23 | 288 | 24 | 287 | hypothetical protein OsJ_10583 [Oryza sativa Japonica Group] |
RefSeq | NP_001049912.1 | 0 | 23 | 346 | 24 | 345 | Os03g0309400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146436.1 | 0 | 36 | 346 | 36 | 346 | hypothetical protein LOC100280019 [Zea mays] |
RefSeq | XP_002457946.1 | 0 | 1 | 346 | 1 | 346 | hypothetical protein SORBIDRAFT_03g022950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-26 | 61 | 343 | 18 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-21 | 61 | 341 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.0000000001 | 60 | 268 | 16 | 255 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.0000000001 | 60 | 268 | 16 | 255 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.0000000001 | 60 | 268 | 16 | 255 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |