| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g025260.1 |
| Family | GH28 |
| Protein Properties | Length: 421 Molecular Weight: 44161.3 Isoelectric Point: 9.1528 |
| Chromosome | Chromosome/Scaffold: 3 Start: 50700008 End: 50702090 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 58 | 371 | 0 |
| CRVPRATVLLPSGHRFLLSPVTLQGPCSTKLTLQPRRPLQWLNFKWLQDFSILGAGTVDGQSITSLQSASSPANNSTSQTSTGHWHSPGVKPTLIRFYNS FNVTVRNIRITNSPQCHLKFDSSGGIKVKNITISSPGDSPNTDGIHLQNTRDVEIKSSTIGCGDDCVSIQTGCSNVHIKNVVCNPGHGISLGGLGKDYSL ACVSDVVAENIIVQNALYGVRIKTWQGGVGSVRNITFSNVRVANVATPIAIDQFYCDRGGARCANRTGAVAITGVAYRRVVGTYSFQPVRLACSDARPCT GVTMVDVRLSPAAT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 421 Download |
| MRSSVASAAL LAGALLCLLA SPARSTGRTT LSVLSFGAAA DGVTDDAEAL VAAWRVACRV 60 PRATVLLPSG HRFLLSPVTL QGPCSTKLTL QPRRPLQWLN FKWLQDFSIL GAGTVDGQSI 120 TSLQSASSPA NNSTSQTSTG HWHSPGVKPT LIRFYNSFNV TVRNIRITNS PQCHLKFDSS 180 GGIKVKNITI SSPGDSPNTD GIHLQNTRDV EIKSSTIGCG DDCVSIQTGC SNVHIKNVVC 240 NPGHGISLGG LGKDYSLACV SDVVAENIIV QNALYGVRIK TWQGGVGSVR NITFSNVRVA 300 NVATPIAIDQ FYCDRGGARC ANRTGAVAIT GVAYRRVVGT YSFQPVRLAC SDARPCTGVT 360 MVDVRLSPAA TAAGGGATVA PLCWNSYGEA RGTIQPLGVG CLQRSNGYAM PLTQPFNYTC 420 * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 8.0e-62 | 25 | 404 | 396 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-65 | 27 | 366 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-68 | 63 | 367 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-78 | 29 | 366 | 355 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-89 | 23 | 396 | 396 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD88046.1 | 0 | 10 | 420 | 2 | 372 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAY74476.1 | 0 | 10 | 420 | 2 | 382 | hypothetical protein OsI_02367 [Oryza sativa Indica Group] |
| RefSeq | NP_189293.1 | 0 | 21 | 420 | 57 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266099.1 | 0 | 31 | 420 | 82 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002457998.1 | 0 | 1 | 420 | 1 | 420 | hypothetical protein SORBIDRAFT_03g025260 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 9e-24 | 19 | 388 | 9 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 1e-20 | 109 | 371 | 113 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000003 | 142 | 372 | 88 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000003 | 142 | 372 | 88 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000003 | 142 | 372 | 88 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
