| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g025990.1 |
| Family | GH35 |
| Protein Properties | Length: 786 Molecular Weight: 87724 Isoelectric Point: 5.9208 |
| Chromosome | Chromosome/Scaffold: 3 Start: 52272161 End: 52280392 |
| Description | beta galactosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 1 | 294 | 0 |
| MSGSVHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSRGQYYFEGRYDLVHFIKLVKQAGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTD NEPFKAEMQKFTTKIVDMMKSEGLFEWQGGPIILSQIENEFGPLEWDQGEPAKAYASWAANMAVALNTSVPWVMCKEDDAPDPIINTCNGFYCDWFSPNK PHKPTMWTEAWTSWYTGFGIPVPHRPVEDLAYGVAKFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLLREPKWGHLKELHK | |||
| Full Sequence |
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| Protein Sequence Length: 786 Download |
| MSGSVHYPRS VPEMWPDLIQ KAKDGGLDVV QTYVFWNGHE PSRGQYYFEG RYDLVHFIKL 60 VKQAGLYVHL RIGPYVCAEW NFGGFPVWLK YVPGISFRTD NEPFKAEMQK FTTKIVDMMK 120 SEGLFEWQGG PIILSQIENE FGPLEWDQGE PAKAYASWAA NMAVALNTSV PWVMCKEDDA 180 PDPIINTCNG FYCDWFSPNK PHKPTMWTEA WTSWYTGFGI PVPHRPVEDL AYGVAKFIQK 240 GGSFVNYYMY HGGTNFGRTA GGPFIATSYD YDAPIDEYGL LREPKWGHLK ELHKAIKLCE 300 PALVAGDPIV TSLGNAQQAS VFRSSTDACV AFLENKDKVS YARVSFNGMH YNLPPWSISI 360 LPDCKTTVYN TARVGSQISQ MKMEWAGGFT WQSYNEDINS LGDESFVTVG LLEQINVTRD 420 NTDYLWYTTY VDVAQDEQFL SNGKNPVLTV MSAGHALHIF VNGQLTGTVY GSVDDPKLTY 480 RGNVKLWPGS NTISCLSIAV GLPNVGEHFE TWNAGILGPV TLDGLNEGRR DLTWQKWTYK 540 VGLKGEDLSL HSLSGSSSVE WGEPMQKQPL TWYKAFFNAP DGDEPLALDM SSMGKGQIWI 600 NGQGIGRYWP GYKASGTCGI CDYRGEYDEK KCQTNCGDSS QRWYHVPRSW LNPTGNLLVI 660 FEEWGGDPTG ISMVKRTTGS ICADVSEWQP SMTNWRTKDY EKAKIHLQCD HGRKMTDIKF 720 ASFGTPQGSC GSYSEGGCHA HKSYDIFWKN CIGQERCGVS VVPNVFGGDP CPGTMKRAVV 780 EAICG* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 0.0001 | 7 | 89 | 85 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| COG1874 | LacA | 5.0e-19 | 2 | 286 | 330 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam02140 | Gal_Lectin | 4.0e-19 | 707 | 784 | 82 | + Galactose binding lectin domain. | ||
| pfam01301 | Glyco_hydro_35 | 1.0e-155 | 2 | 296 | 310 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 1 | 784 | 794 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC70952.1 | 0 | 1 | 785 | 40 | 822 | hypothetical protein OsI_02561 [Oryza sativa Indica Group] |
| GenBank | EEE54862.1 | 0 | 1 | 785 | 43 | 839 | hypothetical protein OsJ_02342 [Oryza sativa Japonica Group] |
| RefSeq | NP_001043405.1 | 0 | 1 | 785 | 43 | 827 | Os01g0580200 [Oryza sativa (japonica cultivar-group)] |
| Swiss-Prot | P45582 | 0 | 1 | 784 | 44 | 831 | BGAL_ASPOF RecName: Full=Beta-galactosidase; Short=Lactase; Flags: Precursor |
| RefSeq | XP_002455836.1 | 0 | 1 | 785 | 1 | 785 | hypothetical protein SORBIDRAFT_03g025990 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 4.99983e-42 | 2 | 292 | 26 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.00003 | 441 | 609 | 393 | 546 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 3e-36 | 1 | 300 | 28 | 339 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 3e-36 | 1 | 300 | 28 | 339 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778160 | 685 | 1 | 677 | 0 |
| HO780602 | 657 | 34 | 677 | 0 |
| HO795552 | 524 | 74 | 592 | 0 |
| HO795552 | 51 | 35 | 85 | 7e-27 |
| HO795552 | 35 | 1 | 35 | 7e-27 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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