| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g028140.1 |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 47471.8 Isoelectric Point: 7.4249 |
| Chromosome | Chromosome/Scaffold: 3 Start: 55907310 End: 55910067 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 78 | 419 | 0 |
| GGAELYVPPGVWLTGPFNLTSRMTLFLARGAVVRATQDTSSWPLIEPLPSYGRGRELPGGRYISLIHGSGLQDVVITGENGTIDGQGTPWWDMWKKGTLL YTRPHLLELMSSSHIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDAIAIKSGWDEYGIAYGRPSSDIT VRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFSSGFGIHIKTNTGRGGFIRNVTVSDVTLDNVRYGLRIVGDVGNHPDERYNRSALPIVDALTIKNVQ GQNIKEAGLIKGIANSAFSRICLSNVKLTGGAPVQPWKCEAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MARRCPCRLL LAVVVLVLVS AAAQAQAQET CSGAVPAPPR RGARVSVASF GGAGDGRTLN 60 TAAFARAVAT IERRAVPGGA ELYVPPGVWL TGPFNLTSRM TLFLARGAVV RATQDTSSWP 120 LIEPLPSYGR GRELPGGRYI SLIHGSGLQD VVITGENGTI DGQGTPWWDM WKKGTLLYTR 180 PHLLELMSSS HIIVSNVVFQ DSPFWNIHPV YCSNVVIRNV TILAPHDSPN TDGIDPDSSS 240 NICIEDCYIS TGDDAIAIKS GWDEYGIAYG RPSSDITVRR ITGSSPFAGF AVGSETSGGV 300 ENVLAEHLNF FSSGFGIHIK TNTGRGGFIR NVTVSDVTLD NVRYGLRIVG DVGNHPDERY 360 NRSALPIVDA LTIKNVQGQN IKEAGLIKGI ANSAFSRICL SNVKLTGGAP VQPWKCEAVS 420 GGALDVQPSP CTELTSTSGT SFCTNSL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-26 | 35 | 408 | 391 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 3.0e-26 | 42 | 343 | 313 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-31 | 45 | 436 | 414 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-38 | 143 | 423 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-60 | 45 | 413 | 394 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY74990.1 | 0 | 29 | 447 | 26 | 445 | hypothetical protein OsI_02888 [Oryza sativa Indica Group] |
| GenBank | EAY99223.1 | 0 | 28 | 445 | 34 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
| RefSeq | NP_001056466.1 | 0 | 28 | 445 | 34 | 448 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141464.1 | 0 | 1 | 447 | 1 | 446 | hypothetical protein LOC100273574 [Zea mays] |
| RefSeq | XP_002455965.1 | 0 | 1 | 447 | 1 | 447 | hypothetical protein SORBIDRAFT_03g028140 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 18 | 409 | 1 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 18 | 409 | 1 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 18 | 409 | 1 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 18 | 409 | 1 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-20 | 88 | 412 | 51 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
