CAZyme Information

Basic Information
SpeciesSorghum bicolor
Cazyme IDSb03g028160.1
FamilyGH18
Protein PropertiesLength: 431 Molecular Weight: 48362.1 Isoelectric Point: 7.9287
ChromosomeChromosome/Scaffold: 3 Start: 55917363 End: 55922918
DescriptionGlycosyl hydrolase superfamily protein
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH181064215.5e-31
  VLAYVTPWNSKGYDMAKLFSKKLTHVSPVWYDLKSDRNRLVLEGEHNFDAKWVSELQSNGSLVVPRIVLEAFPAVFLLEKKQKEKAIDLIVSECRDKGYD
  GIVLESWSRWAIYGVLDDQELRYMALQFLKQLGEALHSVSSQSSSRHLELIYVIPAPRMQKLNNQDFGPEDLVHLADTLDGFSLMTYDFSGPQNPGPSAP
  LKWVHDSLAALLSAKGSSHSSSHSQMIFLGINFYGNDFLLSRGSGGGAITGRDFVHLLEKYKPSLQWDEKSLEHFFIYSDEGVKHAVFYPTLMSLSVRLD
  EARNWGTGLSIWEIGQ
Full Sequence
Protein Sequence     Length: 431     Download
MPPRRRDRRR PRDPSPPSSD ARAPPSASGL RLTLLVPLLL LALVLAALGF SGLLSRSPPH    60
SQTLQTTAHS VYERGLVKRD VSAREILAEH TRVSENRSQR NFPNPVLAYV TPWNSKGYDM    120
AKLFSKKLTH VSPVWYDLKS DRNRLVLEGE HNFDAKWVSE LQSNGSLVVP RIVLEAFPAV    180
FLLEKKQKEK AIDLIVSECR DKGYDGIVLE SWSRWAIYGV LDDQELRYMA LQFLKQLGEA    240
LHSVSSQSSS RHLELIYVIP APRMQKLNNQ DFGPEDLVHL ADTLDGFSLM TYDFSGPQNP    300
GPSAPLKWVH DSLAALLSAK GSSHSSSHSQ MIFLGINFYG NDFLLSRGSG GGAITGRDFV    360
HLLEKYKPSL QWDEKSLEHF FIYSDEGVKH AVFYPTLMSL SVRLDEARNW GTGLSIWEIG    420
QGLDYFFDVL * 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00704Glyco_hydro_185.0e-9106421343+
COG3858COG38582.0e-18181430257+
cd02874GH18_CFLE_spore_hydrolase2.0e-23106430339+
smart00636Glyco_181.0e-26106421348+
cd02876GH18_SI-CLP1.0e-146102430335+
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACG34172.101543015430hydrolase, hydrolyzing O-glycosyl compounds [Zea mays]
GenBankEEC71106.105643066435hypothetical protein OsI_02892 [Oryza sativa Indica Group]
GenBankEEE55003.105643066435hypothetical protein OsJ_02637 [Oryza sativa Japonica Group]
RefSeqNP_001130247.101543015430hypothetical protein LOC100191341 [Zea mays]
RefSeqXP_002455966.101543015430hypothetical protein SORBIDRAFT_03g028160 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bxw_A0404307393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3bxw_B0404307393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
Transmembrane Domains
StartEnd
3254
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
JG9068852601594180
GR8810172581494060
JG8005012441223650
DV531720218572740
DR800796214572700
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_013_00129.1
Arabidopsis lyrata352729
Arabidopsis thalianaAT4G01040.1
Brachypodium distachyonBradi2g43770.1
Brassica rapaBra000939
Carica papayaevm.model.supercontig_273.9
Capsella rubellaCarubv10001405m
Chlamydomonas reinhardtiiCre03.g200650.t1.1
Citrus clementinaCiclev10020231m
Citrus sinensisorange1.1g014108morange1.1g014001m
Cucumis sativusCucsa.259130.2Cucsa.259130.1
Eucalyptus grandisEucgr.E00067.1
Fragaria vescamrna19212.1-v1.0-hybrid
Glycine maxGlyma03g41760.2Glyma19g44401.1Glyma03g41760.1
Gossypium raimondiiGorai.008G124300.1
Linum usitatissimumLus10005946Lus10029447
Malus domesticaMDP0000223446MDP0000126058
Manihot esculentacassava4.1_001521m
Medicago truncatulaMedtr5g025480.1
Mimulus guttatusmgv1a010899m
Oryza sativaLOC_Os01g43220.1
Panicum virgatumPavirv00054484mPavirv00033212m
Physcomitrella patensPp1s162_65V6.1
Phaseolus vulgarisPhvul.006G111900.1
Picea abiesMA_557825g0010
Populus trichocarpaPotri.014G096700.1Potri.014G096700.2Potri.014G096700.4Potri.014G096700.3
Prunus persicappa006146m
Ricinus communis29742.m001446
Setaria italicaSi002099m
Selaginella moellendorffii249085240
Thellungiella halophilaThhalv10028671m
Vitis viniferaGSVIVT01027076001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny