| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g028380.1 |
| Family | GH28 |
| Protein Properties | Length: 405 Molecular Weight: 41265.9 Isoelectric Point: 6.0722 |
| Chromosome | Chromosome/Scaffold: 3 Start: 56246666 End: 56248201 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 393 | 0 |
| AWSAACRSQEPATVYVPNGHFLLSRAAFTGPCSSSRVTLQVDGTLVAPSGYTSRGGSSGGDDDGWIVFDHVDGLTVSGGTVDGRGEALWACKAAGHSGCP SGATSLKVLNSRDVVISGLTSVDSELYHVVINGCEGVTVQDVQIVAPGSSPNTDGIHVQGSSQVTVTRTGIQTGDDCVSVGPGTSNLRVEHVSCGPGHGI SIGSLGKESEESGVENVTVTGAAFVGTENGLRIKTWARAKVEGAYVRGVAFEHALMHDVRNPIIIDQSYCPNHGRGAGCPHQSSAVKISDVRYTDIQGTS ASKVAVKFDCSASNPCSGIGLKDIKLTLDGGKPAEATCQHADGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 405 Download |
| MARSNAYSLV LLLLYCYVSS GAAEAAAYNV AGFGAKPGGR TDSSGAFASA WSAACRSQEP 60 ATVYVPNGHF LLSRAAFTGP CSSSRVTLQV DGTLVAPSGY TSRGGSSGGD DDGWIVFDHV 120 DGLTVSGGTV DGRGEALWAC KAAGHSGCPS GATSLKVLNS RDVVISGLTS VDSELYHVVI 180 NGCEGVTVQD VQIVAPGSSP NTDGIHVQGS SQVTVTRTGI QTGDDCVSVG PGTSNLRVEH 240 VSCGPGHGIS IGSLGKESEE SGVENVTVTG AAFVGTENGL RIKTWARAKV EGAYVRGVAF 300 EHALMHDVRN PIIIDQSYCP NHGRGAGCPH QSSAVKISDV RYTDIQGTSA SKVAVKFDCS 360 ASNPCSGIGL KDIKLTLDGG KPAEATCQHA DGRASGEVEP PSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-76 | 62 | 395 | 336 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-81 | 60 | 390 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-82 | 62 | 403 | 349 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 5.0e-84 | 61 | 404 | 348 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-113 | 36 | 404 | 369 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB21092.1 | 0 | 1 | 404 | 1 | 400 | polygalacturonase precursor-like [Oryza sativa Japonica Group] |
| GenBank | EAY75017.1 | 0 | 1 | 404 | 1 | 400 | hypothetical protein OsI_02915 [Oryza sativa Indica Group] |
| RefSeq | NP_001043617.1 | 0 | 1 | 404 | 19 | 418 | Os01g0623600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002458187.1 | 0 | 1 | 404 | 1 | 404 | hypothetical protein SORBIDRAFT_03g028380 [Sorghum bicolor] |
| RefSeq | XP_002529091.1 | 0 | 11 | 404 | 11 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-24 | 155 | 378 | 154 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.000000000000008 | 29 | 392 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000000000000009 | 126 | 383 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000009 | 126 | 383 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000009 | 126 | 383 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
