| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g028790.1 |
| Family | CBM43 |
| Protein Properties | Length: 311 Molecular Weight: 29984 Isoelectric Point: 5.4001 |
| Chromosome | Chromosome/Scaffold: 3 Start: 56949116 End: 56950611 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 127 | 208 | 1.9e-36 |
| WCVASQSASPTALQVALDYACGYGADCSPIQQGGSCFNPDTVHDHASYAFNSYYQKNPAPTSCDFGGTATITNTDPSSGSCQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 311 Download |
| MGHHRLFNPL GFLLAIVVFY GGTEQRRAEA AAGGASPHRL LTTISVSKPS YPTVTTPMSA 60 YADPVSTPGT PYSTFPSLAT GTGGAGAGAG TGGGGGGGGG VGAGTGGGGG GAGAGGGGGG 120 GGGGGTWCVA SQSASPTALQ VALDYACGYG ADCSPIQQGG SCFNPDTVHD HASYAFNSYY 180 QKNPAPTSCD FGGTATITNT DPSSGSCQYP SSSGGGQNMM PPPSPTTMPP TVPTTPMTPM 240 TPTTPDTTPV YGLSPPDYGS MSPPGPGYGS TSPPDYNDVG AAATMGQQGS AAALALLCVL 300 IAAVSLHVSK * 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-24 | 127 | 196 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-36 | 127 | 201 | 76 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG38222.1 | 0 | 4 | 310 | 3 | 297 | GPI-anchored protein [Zea mays] |
| RefSeq | NP_001043647.1 | 0 | 19 | 306 | 13 | 274 | Os01g0631500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001131448.1 | 0 | 1 | 310 | 1 | 297 | hypothetical protein LOC100192780 [Zea mays] |
| RefSeq | NP_001142053.1 | 0 | 4 | 310 | 3 | 309 | hypothetical protein LOC100274209 [Zea mays] |
| RefSeq | XP_002456008.1 | 0 | 1 | 310 | 1 | 310 | hypothetical protein SORBIDRAFT_03g028790 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 6e-21 | 125 | 214 | 11 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
