| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g028930.1 |
| Family | CE8 |
| Protein Properties | Length: 302 Molecular Weight: 32516.4 Isoelectric Point: 8.9634 |
| Chromosome | Chromosome/Scaffold: 3 Start: 57094683 End: 57096120 |
| Description | pectinesterase 11 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 14 | 293 | 0 |
| LVDQSGKGDHRRIQDAIDAAPAGGSGSGGGGVVIRIKPGVYRQVEKVVVDKPCITLVGTSASSTIITWNESWVASESPTVSVLASDFIAKRLAFQNTFGS SGPAVAMRVAGDRAAFYGCRFVSFQDTLLDDTGRHYYRGCYVQGATDFIFGNGKALFDKCHLHSVSAAGGAFTAHKRWSESEDTGFSFVGCKLTGLGAGT SILGRPWGPYSRVVFALSYMSSTVRPQGWDDWTDGDKQRQRTAFYGQYQCYGEGSKTDGRVAWSHDMSQAQAAPFITKGW | |||
| Full Sequence |
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| Protein Sequence Length: 302 Download |
| MLTTGSRSRQ LVLLVDQSGK GDHRRIQDAI DAAPAGGSGS GGGGVVIRIK PGVYRQVEKV 60 VVDKPCITLV GTSASSTIIT WNESWVASES PTVSVLASDF IAKRLAFQNT FGSSGPAVAM 120 RVAGDRAAFY GCRFVSFQDT LLDDTGRHYY RGCYVQGATD FIFGNGKALF DKCHLHSVSA 180 AGGAFTAHKR WSESEDTGFS FVGCKLTGLG AGTSILGRPW GPYSRVVFAL SYMSSTVRPQ 240 GWDDWTDGDK QRQRTAFYGQ YQCYGEGSKT DGRVAWSHDM SQAQAAPFIT KGWVGGQEWL 300 R* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02671 | PLN02671 | 3.0e-80 | 12 | 301 | 311 | + pectinesterase | ||
| PLN02773 | PLN02773 | 3.0e-81 | 12 | 300 | 308 | + pectinesterase | ||
| PLN02665 | PLN02665 | 3.0e-92 | 15 | 300 | 302 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 3.0e-105 | 11 | 301 | 312 | + pectinesterase family protein | ||
| PLN02432 | PLN02432 | 0 | 1 | 301 | 301 | + putative pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF05574.2 | 0 | 11 | 301 | 41 | 325 | Os01g0634600 [Oryza sativa Japonica Group] |
| EMBL | CAN79458.1 | 0 | 3 | 301 | 36 | 326 | hypothetical protein [Vitis vinifera] |
| GenBank | EEC71149.1 | 0 | 11 | 301 | 41 | 330 | hypothetical protein OsI_02978 [Oryza sativa Indica Group] |
| RefSeq | NP_001043660.1 | 0 | 11 | 301 | 4 | 293 | Os01g0634600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002458207.1 | 0 | 1 | 301 | 1 | 301 | hypothetical protein SORBIDRAFT_03g028930 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 9.80909e-45 | 13 | 301 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 9.00054e-42 | 14 | 301 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 4e-23 | 10 | 293 | 30 | 361 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 3e-18 | 24 | 295 | 19 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 3e-18 | 24 | 295 | 19 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CJ554400 | 224 | 78 | 300 | 0 |
| AM722128 | 272 | 1 | 268 | 0 |
| AM721699 | 269 | 1 | 265 | 0 |
| BM140477 | 182 | 90 | 271 | 0 |
| CJ525963 | 206 | 95 | 300 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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