| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g029030.1 |
| Family | GH28 |
| Protein Properties | Length: 533 Molecular Weight: 57209.5 Isoelectric Point: 8.0831 |
| Chromosome | Chromosome/Scaffold: 3 Start: 57184908 End: 57188862 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 158 | 485 | 0 |
| AAACNQGASTVLVPPELEFLVGPISFSGPYCKPNIVFQLEGTILAPTSAKSWGSGLLQWLEFTKLNGIVIQGNGIINGRGQQWWTYLDPEDEDDDDTYDV EFERMPQIKPTALRFYGSFNVVVAGITIVNSSQCHLKFDNCQGVMVHDVTISSPENSLNTDGIHLQNSKDVSIHHTNLACGDDCISIQTGCSNINIHNVN CGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMNGVRIKTWQGGVGLVQDIRFSNIQVSEVQTPIIIDQFYCDRSTCRNQTSAVAVSGVQYENIRGTF TIKPVHFACSDSLPCSGISLTGVQLRPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 533 Download |
| MKLRAKGLGL LLLLVLLAIC STIEVSEARR GKHWRSSRSS PGSSQLKKGK GKKSSSRRQH 60 GSNRPSPKPP VSSTPSSGAG KGNQNPYQPS PNAPPSPANG SRHSTPKLPP TSSCGKGHQQ 120 PSQPPPATSQ GAVFNVVDFG AKGDGVTDDT KAFEGAWAAA CNQGASTVLV PPELEFLVGP 180 ISFSGPYCKP NIVFQLEGTI LAPTSAKSWG SGLLQWLEFT KLNGIVIQGN GIINGRGQQW 240 WTYLDPEDED DDDTYDVEFE RMPQIKPTAL RFYGSFNVVV AGITIVNSSQ CHLKFDNCQG 300 VMVHDVTISS PENSLNTDGI HLQNSKDVSI HHTNLACGDD CISIQTGCSN INIHNVNCGP 360 GHGISIGGLG RDNTKACVSN VTVRDVNMFR TMNGVRIKTW QGGVGLVQDI RFSNIQVSEV 420 QTPIIIDQFY CDRSTCRNQT SAVAVSGVQY ENIRGTFTIK PVHFACSDSL PCSGISLTGV 480 QLRPVQVPHY HLNNPFCWQA FGELYTPTVP PIACLQIGKP AGNNLQSYDD IC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-63 | 131 | 482 | 357 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-66 | 134 | 483 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-68 | 161 | 482 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-69 | 135 | 483 | 354 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-83 | 133 | 515 | 387 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN35722.1 | 0 | 1 | 532 | 1 | 541 | unknown [Zea mays] |
| RefSeq | NP_001043666.1 | 0 | 20 | 532 | 20 | 538 | Os01g0636500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148771.1 | 0 | 1 | 532 | 1 | 541 | polygalacturonase [Zea mays] |
| RefSeq | NP_001150912.1 | 0 | 20 | 532 | 20 | 536 | polygalacturonase [Zea mays] |
| RefSeq | XP_002456022.1 | 0 | 1 | 532 | 1 | 532 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-26 | 161 | 430 | 36 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-18 | 225 | 482 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-18 | 225 | 482 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-18 | 225 | 482 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-18 | 225 | 482 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
