| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g034100.1 |
| Family | CBM43 |
| Protein Properties | Length: 498 Molecular Weight: 53967.4 Isoelectric Point: 5.3806 |
| Chromosome | Chromosome/Scaffold: 3 Start: 62307869 End: 62311093 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 367 | 449 | 5.2e-33 |
| WCIASANASETDLQNALNWACGPGNVDCSAIQPSQPCYQPDTLASHASYAFNSYYQQNGANVVACDFSGAGIRTTKDPSYDTC | |||
| GH17 | 27 | 345 | 0 |
| IGVCYGRNADDLPAPDKVAQLIQQQSIKYVRIYDTNIDVIKAFANTGVELMVGVPNSDLLAFAQYQSNVDTWLKNSILPYYPATMITYITVGAEVTESPT NVSALVVPAMRNVHTALKKAGLHKKITISSTHSLGILSRSFPPSAGAFNSSYAYFLKPMLEFLVENQAPFMVDLYPYYAYQNSPSNVSLNYALFSPQSQD VIDPNTGLVYTNMFDAQVDSIFFALMALNFKTLKIMITESGWPNKGAAKETGATPDNAQTYNTNLIRHVVNDSGTPAKPGEEIDVYIFSLFNENRKPGIE SERNWGLFFPDKSSIYSLD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 498 Download |
| MAGRLMLAAL PILLFLLLVG QCHGGKIGVC YGRNADDLPA PDKVAQLIQQ QSIKYVRIYD 60 TNIDVIKAFA NTGVELMVGV PNSDLLAFAQ YQSNVDTWLK NSILPYYPAT MITYITVGAE 120 VTESPTNVSA LVVPAMRNVH TALKKAGLHK KITISSTHSL GILSRSFPPS AGAFNSSYAY 180 FLKPMLEFLV ENQAPFMVDL YPYYAYQNSP SNVSLNYALF SPQSQDVIDP NTGLVYTNMF 240 DAQVDSIFFA LMALNFKTLK IMITESGWPN KGAAKETGAT PDNAQTYNTN LIRHVVNDSG 300 TPAKPGEEID VYIFSLFNEN RKPGIESERN WGLFFPDKSS IYSLDWTGRG NVDVMTGANI 360 TSANGTWCIA SANASETDLQ NALNWACGPG NVDCSAIQPS QPCYQPDTLA SHASYAFNSY 420 YQQNGANVVA CDFSGAGIRT TKDPSYDTCV YLAAGNKMST MNSTSLPAQS NSGPVPCAKY 480 FTTFLPMLAP VMAAVML* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.001 | 261 | 338 | 81 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-22 | 366 | 438 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-41 | 366 | 451 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-110 | 27 | 345 | 319 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28065.1 | 0 | 1 | 497 | 1 | 496 | unknown [Zea mays] |
| GenBank | EAZ13481.1 | 0 | 20 | 455 | 16 | 451 | hypothetical protein OsJ_03397 [Oryza sativa Japonica Group] |
| GenBank | EEC71452.1 | 0 | 20 | 497 | 16 | 493 | hypothetical protein OsI_03677 [Oryza sativa Indica Group] |
| RefSeq | NP_001044198.1 | 0 | 20 | 497 | 16 | 493 | Os01g0739700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002456331.1 | 0 | 1 | 497 | 1 | 497 | hypothetical protein SORBIDRAFT_03g034100 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 27 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 26 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 26 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 26 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 26 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
