| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g034250.1 |
| Family | CE8 |
| Protein Properties | Length: 403 Molecular Weight: 43841.8 Isoelectric Point: 8.4445 |
| Chromosome | Chromosome/Scaffold: 3 Start: 62471206 End: 62474730 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 96 | 396 | 0 |
| VVDKNPAFGDFTTIQAAIDSLPVINLVRVVIRVNAGTYTEKVSISAMRAFITLEGAGADSTIVQWGDTADSPTGPKGRPLGTFNSATFAVNAQYFLARNI TFKLWHWAAGQNTSPVPKPGATGKQAVALRVSADNAAFVGCKFLGAQDTLYDHSGRHYYKECYIEGSVDFIFGNALSLYEDCHVHAIARDYGALTAQNRQ SMLEDTGFSFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPNGWYNWGDPNRELTVFYGQYKCTGPGASYAGRVAWSHELTDDEAKPFISLSFID G | |||
| Full Sequence |
|---|
| Protein Sequence Length: 403 Download |
| MGMRRARFLA CIAMAAIVLL APPSTCGVAG HSRGLRPGRS AGAGGAGDPP PLFPVNATRA 60 EMIERQFMEW VRYMGGLRHS TFQHALARAF PSYSLVVDKN PAFGDFTTIQ AAIDSLPVIN 120 LVRVVIRVNA GTYTEKVSIS AMRAFITLEG AGADSTIVQW GDTADSPTGP KGRPLGTFNS 180 ATFAVNAQYF LARNITFKLW HWAAGQNTSP VPKPGATGKQ AVALRVSADN AAFVGCKFLG 240 AQDTLYDHSG RHYYKECYIE GSVDFIFGNA LSLYEDCHVH AIARDYGALT AQNRQSMLED 300 TGFSFVNCRV TGSGALYLGR AWGTFSRVVF AYTYMDNIII PNGWYNWGDP NRELTVFYGQ 360 YKCTGPGASY AGRVAWSHEL TDDEAKPFIS LSFIDGTEWI RL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02634 | PLN02634 | 1.0e-107 | 95 | 400 | 307 | + probable pectinesterase | ||
| PLN02304 | PLN02304 | 3.0e-109 | 95 | 401 | 315 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 5.0e-110 | 104 | 401 | 298 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 9.0e-112 | 77 | 400 | 326 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 0 | 2 | 402 | 401 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN26093.1 | 0 | 1 | 402 | 1 | 399 | unknown [Zea mays] |
| GenBank | ACR36293.1 | 0 | 1 | 402 | 1 | 391 | unknown [Zea mays] |
| RefSeq | NP_001044216.1 | 0 | 1 | 402 | 1 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002440102.1 | 0 | 31 | 402 | 43 | 406 | hypothetical protein SORBIDRAFT_09g026060 [Sorghum bicolor] |
| RefSeq | XP_002458469.1 | 0 | 1 | 402 | 1 | 402 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 104 | 401 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 9.80909e-45 | 104 | 401 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 3e-28 | 93 | 379 | 31 | 347 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 6e-18 | 92 | 388 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 6e-18 | 92 | 388 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
