| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g034785.1 |
| Family | GT19 |
| Protein Properties | Length: 445 Molecular Weight: 49518.8 Isoelectric Point: 8.1656 |
| Chromosome | Chromosome/Scaffold: 3 Start: 62948954 End: 62955249 |
| Description | transferases, transferring glycosyl groups |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT19 | 21 | 402 | 0 |
| VFVVAGEVSGDSLASRLMASLRALSPVPVRFAGVGGALMCKEGLQSLFPMEEIAIMGMWELLPHIYSIKRKIEDTANAAMLFQPHAVVTVDSKGFSFRLL KQLKCRSNQKVQNPLHIHYVSPSFWAWKGGESRLSKLHNFVDHMFCILPFEEEICRLNGLPATYVGHPLLDDAIGLNMGPELSSDESKYQRSCEAFQLEH GLSPGATIITMLPGSRMQEVVRMLPIFLHTVQNLRQTFNELSLVIPVAPHRDVRTYIEKVVQSGPFPVVLIPGGSLKERYDAFSASRVALCTSGTAVMEL MLARLPCVVAYQAHFITECFIHLRKKINFISLPNILLNSPVVPEILFRACTAKNLAAKLSEVISNDQIRQIQIESADQVFKV | |||
| Full Sequence |
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| Protein Sequence Length: 445 Download |
| ARALSYGRVV DAAARDGELR VFVVAGEVSG DSLASRLMAS LRALSPVPVR FAGVGGALMC 60 KEGLQSLFPM EEIAIMGMWE LLPHIYSIKR KIEDTANAAM LFQPHAVVTV DSKGFSFRLL 120 KQLKCRSNQK VQNPLHIHYV SPSFWAWKGG ESRLSKLHNF VDHMFCILPF EEEICRLNGL 180 PATYVGHPLL DDAIGLNMGP ELSSDESKYQ RSCEAFQLEH GLSPGATIIT MLPGSRMQEV 240 VRMLPIFLHT VQNLRQTFNE LSLVIPVAPH RDVRTYIEKV VQSGPFPVVL IPGGSLKERY 300 DAFSASRVAL CTSGTAVMEL MLARLPCVVA YQAHFITECF IHLRKKINFI SLPNILLNSP 360 VVPEILFRAC TAKNLAAKLS EVISNDQIRQ IQIESADQVF KVLYEPIKKR DTLLREEIGD 420 SGLSSNFLSP SMIAALTVLY MDRHQ 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK01021 | lpxB | 4.0e-35 | 22 | 405 | 392 | + lipid-A-disaccharide synthase; Reviewed | ||
| TIGR00215 | lpxB | 6.0e-56 | 21 | 407 | 392 | + lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam02684 | LpxB | 5.0e-77 | 21 | 418 | 400 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
| PRK00025 | lpxB | 6.0e-101 | 19 | 403 | 387 | + lipid-A-disaccharide synthase; Reviewed | ||
| COG0763 | LpxB | 1.0e-102 | 19 | 403 | 386 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008915 | lipid-A-disaccharide synthase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC71491.1 | 0 | 4 | 445 | 29 | 469 | hypothetical protein OsI_03760 [Oryza sativa Indica Group] |
| RefSeq | NP_001044267.1 | 0 | 4 | 445 | 29 | 469 | Os01g0752600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001140462.1 | 0 | 1 | 445 | 21 | 465 | hypothetical protein LOC100272521 [Zea mays] |
| RefSeq | XP_002458499.1 | 0 | 1 | 445 | 1 | 445 | hypothetical protein SORBIDRAFT_03g034785 [Sorghum bicolor] |
| RefSeq | XP_002528957.1 | 0 | 7 | 439 | 33 | 464 | Lipid-A-disaccharide synthase, putative [Ricinus communis] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lipid IVA biosynthesis | LIPIDADISACCHARIDESYNTH-RXN | EC-2.4.1.182 | lipid-A-disaccharide synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG864023 | 277 | 103 | 379 | 0 |
| DV519136 | 259 | 1 | 259 | 0 |
| DT652350 | 252 | 1 | 252 | 0 |
| DR962527 | 244 | 1 | 244 | 0 |
| DR969018 | 241 | 1 | 241 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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