| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g035970.1 |
| Family | GH3 |
| Protein Properties | Length: 676 Molecular Weight: 73811 Isoelectric Point: 8.142 |
| Chromosome | Chromosome/Scaffold: 3 Start: 63984194 End: 63990374 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 124 | 359 | 0 |
| LSTRLGIPLIYGIDAVHGNNNVYNATLFPHNIGLGATRDPGLIKRIGEATALEVRATGIQYTFAPCIAVCRDPRWGRCYESYSEDHKVVQQMTDIILGLQ GEIPVNHTKGVPYVAGKDKVAACAKHYVGDGGTHNGINENNTIIDEHGLLSIHMPPYYDSIIKGVATVMVSYSSLNGVKMHANHHLITGYLKSKLHFRGF VISDWLGVDRITSPPGANYTYSVQAGINAGIDMVMV | |||
| Full Sequence |
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| Protein Sequence Length: 676 Download |
| MFTVRGSRPS GQTIPKKFSD MRYSNVSWTF LLLLCFVSMA DAEYMKYKDP KQPINSRIRD 60 LIGRMTLAEK IGQMTQIERQ VASANVMKKY FIGSILSGGG SVPAPQASPA IWVNMVNEFQ 120 KGALSTRLGI PLIYGIDAVH GNNNVYNATL FPHNIGLGAT RDPGLIKRIG EATALEVRAT 180 GIQYTFAPCI AVCRDPRWGR CYESYSEDHK VVQQMTDIIL GLQGEIPVNH TKGVPYVAGK 240 DKVAACAKHY VGDGGTHNGI NENNTIIDEH GLLSIHMPPY YDSIIKGVAT VMVSYSSLNG 300 VKMHANHHLI TGYLKSKLHF RGFVISDWLG VDRITSPPGA NYTYSVQAGI NAGIDMVMVP 360 YNYTDYINDL TSLVHKGVIN MSRIDDAVRR ILRVKFTMGL FENPLADLSF AEQLGKKEHR 420 ELAREAVRKS LVLLKNGNPP EQQFLPLPKR ARSILVAGSH ASNLGYQCGG WSIKWMGGSG 480 DITTGTTILG AIKSTVADST SVVYSENPDD SFMKHNDFSF AIIIVGEPPY AETVGDSTDL 540 TMLDPGPDTI RTVCSAVKCA VVIISGRPIV IEPYVPLMEA LVAAWLPGTE GQGVADVLFG 600 DYGFTGKLPQ TWFKSVDQLP MNVGDPHYDP LYPFGFGLTI NSSLPGFSGV DNLGYKKQRV 660 LFVVLCSLLP LVLIS* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 9.0e-41 | 25 | 639 | 698 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 6.0e-44 | 431 | 640 | 230 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 4.0e-82 | 33 | 639 | 688 | + beta-D-glucoside glucohydrolase; Provisional | ||
| COG1472 | BglX | 7.0e-88 | 65 | 473 | 419 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 3.0e-92 | 66 | 394 | 333 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAR14129.1 | 0 | 21 | 639 | 1 | 619 | exo-beta-glucanase [Lilium longiflorum] |
| GenBank | EEC71555.1 | 0 | 31 | 674 | 389 | 1022 | hypothetical protein OsI_03907 [Oryza sativa Indica Group] |
| GenBank | EEE55456.1 | 0 | 45 | 674 | 1 | 620 | hypothetical protein OsJ_03617 [Oryza sativa Japonica Group] |
| RefSeq | NP_001044387.1 | 0 | 31 | 674 | 12 | 655 | Os01g0771900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002456420.1 | 0 | 1 | 675 | 1 | 675 | hypothetical protein SORBIDRAFT_03g035970 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x39_A | 0 | 43 | 643 | 1 | 602 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 1x38_A | 0 | 43 | 643 | 1 | 602 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 1lq2_A | 0 | 43 | 643 | 1 | 602 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1j8v_A | 0 | 43 | 643 | 1 | 602 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1iex_A | 0 | 43 | 643 | 1 | 602 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO784016 | 428 | 93 | 519 | 0 |
| FN998758 | 328 | 90 | 417 | 0 |
| FN998446 | 323 | 90 | 412 | 0 |
| FN998735 | 317 | 90 | 406 | 0 |
| HO784016 | 51 | 44 | 94 | 0.0000000000003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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