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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb03g036790.1 |
Family | CE8 |
Protein Properties | Length: 553 Molecular Weight: 58370.1 Isoelectric Point: 6.6667 |
Chromosome | Chromosome/Scaffold: 3 Start: 64874244 End: 64876721 |
Description | methylesterase PCR A |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 240 | 537 | 0 |
DVVVAQDGSGKFRTVKEAVDAAPDGGKSRYVIYVKKGVYKENVEVGKKKRELMIVGDGMDATVITGSRNVVDGATTFNSATLAVAGDGIILQDLRVENTA GPAKHQAVALRVSADRAVAYRCRVDGYQDTLYAHALRHLYRECFVSGTVDFVFGNAAAVLQGCALAARLPLRGQQNAVTAQGREDPNQNTGTSLHRCRVV PAPDLAPVAGTDFPTFLGRPWKAYSRTVVMLSYLDAHVDARGWLEWDGDFALKTLFYGEYQNEGPGAATAGRVNWPGYHVITDRSVAVQFTVGQFIQG |
Full Sequence |
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Protein Sequence Length: 553 Download |
MLSSNEPLLS SPYQRNASPC RRPVLLITLS SAALLCAGAA FLLLNLPTPD LCASSPDPTS 60 CHAIVADAVL ASPRAHLTRP GPAQVLRAIV ARSLVQHDAA AAAVSGMLRH TGSDSDPRQR 120 AALADCVQLM DLARDRLADA SPAVAAAAAD DARTWLSAAL TYYATCTDGV VVDGPLRDAV 180 VARLEPLKSL ASASLAVLSA VVDDSGSRDA GLADTTYTFP SWVPARDRAL LEAGAAIEAD 240 VVVAQDGSGK FRTVKEAVDA APDGGKSRYV IYVKKGVYKE NVEVGKKKRE LMIVGDGMDA 300 TVITGSRNVV DGATTFNSAT LAVAGDGIIL QDLRVENTAG PAKHQAVALR VSADRAVAYR 360 CRVDGYQDTL YAHALRHLYR ECFVSGTVDF VFGNAAAVLQ GCALAARLPL RGQQNAVTAQ 420 GREDPNQNTG TSLHRCRVVP APDLAPVAGT DFPTFLGRPW KAYSRTVVML SYLDAHVDAR 480 GWLEWDGDFA LKTLFYGEYQ NEGPGAATAG RVNWPGYHVI TDRSVAVQFT VGQFIQGGNW 540 LNGTGVPYIE GL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 2.0e-143 | 110 | 552 | 451 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 6.0e-146 | 226 | 552 | 334 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 5.0e-153 | 95 | 552 | 474 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 0 | 1 | 552 | 562 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 240 | 537 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACJ02103.1 | 0 | 51 | 552 | 50 | 529 | pectin methylesterase [Oncidium Gower Ramsey] |
EMBL | CAD29733.1 | 0 | 43 | 552 | 45 | 554 | pectin methylesterase [Sesbania rostrata] |
GenBank | EAY76103.1 | 0 | 1 | 552 | 1 | 546 | hypothetical protein OsI_04029 [Oryza sativa Indica Group] |
RefSeq | NP_001044480.1 | 0 | 1 | 552 | 1 | 546 | Os01g0788400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002456465.1 | 0 | 1 | 552 | 1 | 552 | hypothetical protein SORBIDRAFT_03g036790 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 237 | 552 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 240 | 552 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1qjv_B | 2e-20 | 241 | 509 | 7 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-20 | 241 | 509 | 7 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-20 | 241 | 509 | 7 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777316 | 512 | 51 | 553 | 0 |
DV711860 | 313 | 220 | 531 | 0 |
CO475715 | 292 | 239 | 530 | 0 |
CO483304 | 285 | 237 | 521 | 0 |
EB452110 | 280 | 243 | 522 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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