| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g036930.1 |
| Family | PL1 |
| Protein Properties | Length: 374 Molecular Weight: 40529.2 Isoelectric Point: 10.5376 |
| Chromosome | Chromosome/Scaffold: 3 Start: 64966767 End: 64968018 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 91 | 294 | 0 |
| AGKVWITFARSMHIRLAQPLFVKSFTAIDGRGADVHIAGGAGIVLYQVRSVIVHGLHIHDCRAQPEGPAVRPGGAVQPAGGMDGDAIRLVSSTKVWIDHN SLSQCEDGLVDVTVGSTDVTISNNWFFNHDKVMLLGHDDGHAADSRMRVTVAFNRFGPNVNQRMPRIRHGYAHVVNNLYMGWKDYAIGGSMGPSVKSQGN LFMA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 374 Download |
| MASKEFIVVF LLILHAALTT VHGQNIIDRC WRRQRNWAAN RQRLAVCSVG FAGKMRQNRG 60 AGVIRYTVTD PGDDPVRPRP GTLRYGATVL AGKVWITFAR SMHIRLAQPL FVKSFTAIDG 120 RGADVHIAGG AGIVLYQVRS VIVHGLHIHD CRAQPEGPAV RPGGAVQPAG GMDGDAIRLV 180 SSTKVWIDHN SLSQCEDGLV DVTVGSTDVT ISNNWFFNHD KVMLLGHDDG HAADSRMRVT 240 VAFNRFGPNV NQRMPRIRHG YAHVVNNLYM GWKDYAIGGS MGPSVKSQGN LFMASGPADN 300 KKVTRRMPVA GRDGGDWASI GDSFENGAFF KQTGSRVRPN YNKHQAFAAA SSNEVRSLTK 360 DAGVLRCSVG AAC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-28 | 112 | 364 | 272 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-60 | 114 | 292 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-68 | 107 | 296 | 199 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR37663.1 | 0 | 55 | 308 | 1 | 261 | unknown [Zea mays] |
| DDBJ | BAD01325.1 | 0 | 25 | 373 | 28 | 384 | putative Cup s 1 pollen allergen [Oryza sativa Japonica Group] |
| GenBank | EAZ06386.1 | 0 | 25 | 373 | 28 | 384 | hypothetical protein OsI_28615 [Oryza sativa Indica Group] |
| RefSeq | XP_002267384.1 | 0 | 17 | 373 | 12 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002458626.1 | 0 | 1 | 373 | 1 | 373 | hypothetical protein SORBIDRAFT_03g036930 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 24 | 365 | 1 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 24 | 365 | 1 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-20 | 124 | 339 | 77 | 294 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 5e-19 | 110 | 288 | 128 | 322 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.000000000000003 | 130 | 299 | 94 | 255 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
