| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g039150.1 |
| Family | PL1 |
| Protein Properties | Length: 365 Molecular Weight: 39935.4 Isoelectric Point: 5.7146 |
| Chromosome | Chromosome/Scaffold: 3 Start: 66919490 End: 66921033 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 83 | 259 | 0 |
| DLSGTINLSSGVRVSSYKTIDGRGQRVKVSGWGLQLSECEHVIVCALEVEGGRGHDADAVQIKPRSRHVWVDRCTLRDFDDGLVDVTGGSTDVTISRCHL ASHDKAVLIGASSAHVEDRGIRVTIHHCFFDSTRQRHPRVRFGRVHLYNNFTRDWGIYAVCASVEAQIISQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 365 Download |
| MAPPPSDGQL GSEPTMEDTK SLLPYRTVDS SLRALAGQAE GFGRHAIGGL HGDVYHVTNL 60 DDDGPGSLRE GCRRREPLWI VFDLSGTINL SSGVRVSSYK TIDGRGQRVK VSGWGLQLSE 120 CEHVIVCALE VEGGRGHDAD AVQIKPRSRH VWVDRCTLRD FDDGLVDVTG GSTDVTISRC 180 HLASHDKAVL IGASSAHVED RGIRVTIHHC FFDSTRQRHP RVRFGRVHLY NNFTRDWGIY 240 AVCASVEAQI ISQCNIYEAG KKSEVFRYKE EQAADKEQSA RGYIRSEGDL FLNDAKQHAA 300 AASESDAARD EPWDFKVQDS YESCSVQPAS AALKVLLQSY AGWQPVPLPA DVSLTEVDPA 360 DDTA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-37 | 85 | 255 | 191 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 2.0e-40 | 48 | 297 | 269 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 3.0e-59 | 83 | 261 | 191 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD73403.1 | 0 | 1 | 364 | 1 | 343 | putative pectate lyase [Oryza sativa Japonica Group] |
| EMBL | CBI32661.1 | 0 | 21 | 351 | 2 | 324 | unnamed protein product [Vitis vinifera] |
| GenBank | EAY76417.1 | 0 | 60 | 364 | 1 | 308 | hypothetical protein OsI_04348 [Oryza sativa Indica Group] |
| RefSeq | XP_002277576.1 | 0 | 10 | 351 | 33 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002456600.1 | 0 | 1 | 364 | 1 | 364 | hypothetical protein SORBIDRAFT_03g039150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1.00053e-42 | 29 | 319 | 15 | 331 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1.00053e-42 | 29 | 319 | 15 | 331 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 1e-22 | 94 | 257 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 3e-22 | 46 | 257 | 21 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 3e-18 | 101 | 336 | 82 | 325 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY275282 | 332 | 23 | 354 | 0 |
| DY289690 | 286 | 8 | 293 | 0 |
| DY271752 | 268 | 23 | 290 | 0 |
| FC884660 | 274 | 23 | 296 | 0 |
| EL513630 | 274 | 23 | 296 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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