y
Basic Information | |
---|---|
Species | Sorghum bicolor |
Cazyme ID | Sb03g039530.1 |
Family | AA1 |
Protein Properties | Length: 580 Molecular Weight: 63104.3 Isoelectric Point: 8.0221 |
Chromosome | Chromosome/Scaffold: 3 Start: 67205948 End: 67208947 |
Description | laccase 17 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA1 | 28 | 565 | 0 |
AIREYQFDVQMTNVTRLCSSKSIVTVNGQFPGPPVFAREGDFVVIRVVNHVPYNMSIHWHGVRQLRSGWADGPAYITQCPIQSGQSYVYKFTITGQRGTL WWHAHISWLRATVYGAIVILPKPGVPYPFPAPYKEVPVIFGEWWTADTEAVISQALQTGGGPNVSDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYMLRI INAALNDELFFSIAGHPLTVVDVDAVYIKPITVDTILITPGQTTNVLLTTKPSYPGATYYMLAAPYSTARPGTFDNTTVAGILEYEDPTSPPPHAAFNKN LPALKPTLPQINDTSFVANYTAKLRSLATAEYPAAVPQEVDRRFFFTVGLGTHPCAVNGTCQGPTNSSRFAASVNNVSFVLPTTALLQSHFAGKSKGVYS SNFPAAPLVPFNYTGTPPNNTNVANGTKLVVLPYGASVELVLQGTSILGAESHPLHLHGFNFFVVGQGFGNFDPAKDPAKYNLVDPVERNTVGVPAAGWV AIRFRADNPGVWFMHCHLEVHVSWGLKMAWLVLDGDRP |
Full Sequence |
---|
Protein Sequence Length: 580 Download |
MATSYLLPCY VLITVLVLFF SVDVTEGAIR EYQFDVQMTN VTRLCSSKSI VTVNGQFPGP 60 PVFAREGDFV VIRVVNHVPY NMSIHWHGVR QLRSGWADGP AYITQCPIQS GQSYVYKFTI 120 TGQRGTLWWH AHISWLRATV YGAIVILPKP GVPYPFPAPY KEVPVIFGEW WTADTEAVIS 180 QALQTGGGPN VSDAFTINGL PGPLYNCSAK DTFKLKVKPG KTYMLRIINA ALNDELFFSI 240 AGHPLTVVDV DAVYIKPITV DTILITPGQT TNVLLTTKPS YPGATYYMLA APYSTARPGT 300 FDNTTVAGIL EYEDPTSPPP HAAFNKNLPA LKPTLPQIND TSFVANYTAK LRSLATAEYP 360 AAVPQEVDRR FFFTVGLGTH PCAVNGTCQG PTNSSRFAAS VNNVSFVLPT TALLQSHFAG 420 KSKGVYSSNF PAAPLVPFNY TGTPPNNTNV ANGTKLVVLP YGASVELVLQ GTSILGAESH 480 PLHLHGFNFF VVGQGFGNFD PAKDPAKYNL VDPVERNTVG VPAAGWVAIR FRADNPGVWF 540 MHCHLEVHVS WGLKMAWLVL DGDRPNEKLL PPPSDLPRC* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07732 | Cu-oxidase_3 | 2.0e-55 | 35 | 151 | 119 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
PLN02191 | PLN02191 | 5.0e-70 | 10 | 553 | 580 | + L-ascorbate oxidase | ||
PLN02604 | PLN02604 | 8.0e-78 | 5 | 553 | 588 | + oxidoreductase | ||
TIGR03388 | ascorbase | 2.0e-85 | 29 | 553 | 560 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
TIGR03389 | laccase | 0 | 27 | 579 | 554 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN34362.1 | 0 | 1 | 579 | 1 | 582 | unknown [Zea mays] |
GenBank | EEC71780.1 | 0 | 1 | 579 | 1 | 577 | hypothetical protein OsI_04394 [Oryza sativa Indica Group] |
RefSeq | NP_001044773.1 | 0 | 1 | 579 | 1 | 577 | Os01g0842500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147942.1 | 0 | 1 | 579 | 1 | 582 | L-ascorbate oxidase [Zea mays] |
RefSeq | XP_002458747.1 | 0 | 1 | 579 | 1 | 579 | hypothetical protein SORBIDRAFT_03g039530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 29 | 553 | 3 | 517 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1asq_A | 0 | 29 | 553 | 3 | 517 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1asp_B | 0 | 29 | 553 | 3 | 517 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1asp_A | 0 | 29 | 553 | 3 | 517 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1aso_B | 0 | 29 | 553 | 3 | 517 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |