| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g040370.1 |
| Family | GT30 |
| Protein Properties | Length: 454 Molecular Weight: 50078.4 Isoelectric Point: 9.3119 |
| Chromosome | Chromosome/Scaffold: 3 Start: 68000413 End: 68004658 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT30 | 46 | 227 | 0 |
| RWPERLGRPSAARPRPGSPLVWFHAVSLGEGMAALPVVRHCVRLHPDLPVLLTTTTLSSFEVIKDLLPDGVIYQFAPLDCPNAIDSFIGYWKPSLVLLLE SELWPNLIMSAATKGIAVALLNARLSLKSFNHWSMPVGFPLVALMLSKLSLVVPLSTIQAVRFQLLHTPPGIIHFAGDLKYA | |||
| Full Sequence |
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| Protein Sequence Length: 454 Download |
| MRPARAASPA SRGGWALYEL YRAASRAAAP GVLLWRRLQG LEHPTRWPER LGRPSAARPR 60 PGSPLVWFHA VSLGEGMAAL PVVRHCVRLH PDLPVLLTTT TLSSFEVIKD LLPDGVIYQF 120 APLDCPNAID SFIGYWKPSL VLLLESELWP NLIMSAATKG IAVALLNARL SLKSFNHWSM 180 PVGFPLVALM LSKLSLVVPL STIQAVRFQL LHTPPGIIHF AGDLKYAVGD VHAGENQVNE 240 INDLQQQFSN RPLWMAASIH RGEEEVILRV HDELVKMYPA LLLILVPRHP EDCKNIFLAL 300 KKEKVNFVLR STREVVSSTT RVYMVDTLGE LRMLYRVTPV AVIGGSFLPG LAGHNISEAA 360 AAGCAVVTGP HVGHFYHMLV EMWQINPLAV KQVSGEFELL QTLKELLGDA STLGARQRAA 420 KNAFSIMSDG VVNRVWNLVS RFAIDFQTDT WNS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 2.0e-44 | 43 | 228 | 187 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 3.0e-93 | 20 | 442 | 431 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 4.0e-104 | 20 | 442 | 430 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN31913.1 | 0 | 1 | 453 | 1 | 450 | unknown [Zea mays] |
| GenBank | EEC71834.1 | 0 | 1 | 453 | 1 | 453 | hypothetical protein OsI_04493 [Oryza sativa Indica Group] |
| RefSeq | XP_002322900.1 | 0 | 11 | 439 | 5 | 433 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458792.1 | 0 | 1 | 453 | 1 | 453 | hypothetical protein SORBIDRAFT_03g040370 [Sorghum bicolor] |
| RefSeq | XP_002528642.1 | 0 | 7 | 445 | 3 | 441 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 3e-24 | 66 | 419 | 43 | 356 | A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose |
| PDB | 2xcu_C | 3e-24 | 66 | 419 | 43 | 356 | A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose |
| PDB | 2xcu_B | 3e-24 | 66 | 419 | 43 | 356 | A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose |
| PDB | 2xcu_A | 3e-24 | 66 | 419 | 43 | 356 | A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose |
| PDB | 2xci_D | 3e-24 | 66 | 419 | 43 | 356 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV503346 | 238 | 217 | 454 | 0 |
| CB675948 | 272 | 13 | 284 | 0 |
| CA272112 | 194 | 261 | 454 | 0 |
| DR807983 | 241 | 13 | 253 | 0 |
| DV174989 | 235 | 13 | 247 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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