| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g042350.1 |
| Family | GH28 |
| Protein Properties | Length: 404 Molecular Weight: 42263 Isoelectric Point: 8.8277 |
| Chromosome | Chromosome/Scaffold: 3 Start: 69743738 End: 69745436 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 392 | 0 |
| ADACRSPRPATVYVPPGRYLVRSATFTGPCHSSAVTFAIAGTVVAPARYGARGSSGRWITFENMDGLVVSGGGTLDGRGRALWACRRRGGQRDCPNPTSS LTIANSRNVVVAGVRSVDSELFHVVVLQCHGVTVRGVTVEAPADSPNTDGIHMHMSSHVSVYDARISTGDDCISIGPGNSHLWIERVACGPGHGISIGSL GKQQGMEVEAVQNVTVKTTWFTGTMNGLRIKTWGGSKRGFVTGVTFADSTMSGVDNPIIIDQNYCPDSSGCPGAGRSSSIRISDVRYVGIRGSSATPVAV NFDCSRSNPCSGISLQDVALTYQNRPAAAKSYCRNVQGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MAMAKPVLSL LVHLHAALLF LPDPAGGAVY NVLRYGARPD GATDAAGPFL RAWADACRSP 60 RPATVYVPPG RYLVRSATFT GPCHSSAVTF AIAGTVVAPA RYGARGSSGR WITFENMDGL 120 VVSGGGTLDG RGRALWACRR RGGQRDCPNP TSSLTIANSR NVVVAGVRSV DSELFHVVVL 180 QCHGVTVRGV TVEAPADSPN TDGIHMHMSS HVSVYDARIS TGDDCISIGP GNSHLWIERV 240 ACGPGHGISI GSLGKQQGME VEAVQNVTVK TTWFTGTMNG LRIKTWGGSK RGFVTGVTFA 300 DSTMSGVDNP IIIDQNYCPD SSGCPGAGRS SSIRISDVRY VGIRGSSATP VAVNFDCSRS 360 NPCSGISLQD VALTYQNRPA AAKSYCRNVQ GTTLGLVLPP SCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-81 | 27 | 393 | 371 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-89 | 57 | 389 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-93 | 24 | 403 | 385 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-109 | 23 | 402 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-117 | 29 | 403 | 375 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36955.1 | 0 | 117 | 403 | 1 | 285 | unknown [Zea mays] |
| GenBank | EAZ14447.1 | 0 | 3 | 403 | 1 | 408 | hypothetical protein OsJ_04368 [Oryza sativa Japonica Group] |
| RefSeq | NP_001045053.1 | 0 | 3 | 403 | 1 | 408 | Os01g0891100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141204.1 | 0 | 1 | 403 | 1 | 401 | hypothetical protein LOC100273291 [Zea mays] |
| RefSeq | XP_002456767.1 | 0 | 1 | 403 | 1 | 403 | hypothetical protein SORBIDRAFT_03g042350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-18 | 122 | 317 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-16 | 63 | 346 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-16 | 63 | 346 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-16 | 63 | 346 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-16 | 63 | 346 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
