| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g045520.1 |
| Family | GH17 |
| Protein Properties | Length: 761 Molecular Weight: 80655.6 Isoelectric Point: 5.3772 |
| Chromosome | Chromosome/Scaffold: 3 Start: 72758440 End: 72764889 |
| Description | RECA homolog 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 453 | 759 | 0 |
| IGVCYGVIGSGLPSKSDVVQLYKSNGITSMRFYFADKDLLTALRGSGISLALDVGNDKVGELASDSAAAASWVRDNVQAYYPDVDIRYVVVGNEVPGAAS VLQAMQNVHAALASAGLAGNVRVSTAVKMDAIENSSPPSSGVFKDPAAMSPIVQFLAGNGAPLLANVYPYFAYEYSDGIDLNYALFQPSSTTVTDPANGL VYTNLFDAMVDAVRAALDKAGGGGGVDVVVSESGWPSADGKGATVDNARTYNQNLINHAGKGTPRKPGSMEVYVFAMFNEDQKDGDPTEKKFGLFNPDKT PVYPINF | |||
| Full Sequence |
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| Protein Sequence Length: 761 Download |
| MRGLLSSSSA LLRRAAAQLS RAECGSASAS APSPLPRSPL QVHRLNETFN ICNGLNISVQ 60 SANLDMQLDY ESDPPLDGAK AIEKESSLNI AVSQLASDFD RESNLCLERF SRTRKASVVS 120 TGSLKLDLAL GVGGLPKGRM VEIYGKEASG KTTLALHVVK EAQKNGGYCA YIDAENAFNP 180 SFAEAIGVDS ERLLIAQPDS AENSLSIVNS LVGGSVAVVV VDSVAALIPK CEIEGEIYTN 240 SEDIQSRLMT RALRKIQYTL CRSETLIIFV NQVRTKRTSK NFPGIYKEVP CGGNALGFYS 300 AVRMRTSRRE LRYSEDEATG IGISVQIIKN KLAPASLKEA GIDIRFGKGI CHESEILEVA 360 SSVGVILKDG CGYWINNVFL TGKLEAEKFL RENAAVADEI CSTGLAVVFE VCAFSRASLS 420 ALAEAACKIC TPMPASVATA APPTLCSKRV RAIGVCYGVI GSGLPSKSDV VQLYKSNGIT 480 SMRFYFADKD LLTALRGSGI SLALDVGNDK VGELASDSAA AASWVRDNVQ AYYPDVDIRY 540 VVVGNEVPGA ASVLQAMQNV HAALASAGLA GNVRVSTAVK MDAIENSSPP SSGVFKDPAA 600 MSPIVQFLAG NGAPLLANVY PYFAYEYSDG IDLNYALFQP SSTTVTDPAN GLVYTNLFDA 660 MVDAVRAALD KAGGGGGVDV VVSESGWPSA DGKGATVDNA RTYNQNLINH AGKGTPRKPG 720 SMEVYVFAMF NEDQKDGDPT EKKFGLFNPD KTPVYPINFA * 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02012 | tigrfam_recA | 6.0e-84 | 83 | 400 | 323 | + protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage [DNA metabolism, DNA replication, recombination, and repair]. | ||
| pfam00154 | RecA | 7.0e-85 | 87 | 400 | 319 | + recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. | ||
| PRK09354 | recA | 2.0e-94 | 83 | 400 | 323 | + recombinase A; Provisional | ||
| cd00983 | recA | 1.0e-106 | 83 | 400 | 320 | + RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-143 | 453 | 759 | 314 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003697 | single-stranded DNA binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005524 | ATP binding |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006281 | DNA repair |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK97761.1 | 0 | 450 | 736 | 26 | 312 | beta-1,3-glucanase [Sorghum bicolor] |
| GenBank | EEC72138.1 | 0 | 1 | 410 | 1 | 409 | hypothetical protein OsI_05156 [Oryza sativa Indica Group] |
| GenBank | EEE55988.1 | 0 | 19 | 410 | 1 | 391 | hypothetical protein OsJ_04733 [Oryza sativa Japonica Group] |
| RefSeq | NP_001143776.1 | 0 | 1 | 403 | 1 | 401 | hypothetical protein LOC100276540 [Zea mays] |
| RefSeq | XP_002459081.1 | 0 | 1 | 760 | 1 | 760 | hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 453 | 759 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 453 | 759 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 453 | 759 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 453 | 759 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 453 | 759 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO884376 | 299 | 112 | 410 | 0 |
| CA276169 | 264 | 463 | 725 | 0 |
| CN140635 | 223 | 450 | 672 | 0 |
| CN148808 | 223 | 450 | 672 | 0 |
| CA276169 | 41 | 718 | 756 | 7.2 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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