| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g046050.1 |
| Family | GH2 |
| Protein Properties | Length: 1114 Molecular Weight: 125292 Isoelectric Point: 6.1881 |
| Chromosome | Chromosome/Scaffold: 3 Start: 73243285 End: 73250797 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 87 | 979 | 0 |
| YAKSLSGYWKFLLSPSVESVPERFYDTHFDDSNWAALPVPSNWQMHGFDRPIYTNMTYPFPLNPPFVPADNPTGCYRTVFHIPKEWKGRRILLHFEAVDS AFFAWVNGVPIGYSQDSRLPAEFEVTDCCHPCDSDKENVLAVQVMRWSDGSYLEDQDHWRLSGIHRDVLLLSKPQIFITDYFFKATLDDNFSLADIEVDV EIDSHKKDREHVPTLSIEATLFDNSGLSISIDAGLSYANAVNLKPKPNPTGSPCRGFHGYVLGGKIENPKLWSSEHPNLYTLVVLLKDANGKLIDCESCQ VGIRNVVLAHKQMLVNGCPVVLRGVNRHEHHPRLGKTNLEACMIEDVILMKQNNINAVRNSHYPQHPRWYELCDIFGLYVIDEANIETHGFDDSSTFKHP TLEPIWANAMLDRVVSMVERDKNHACIIVWSLGNESSYGPNHVSMSGWIRGRDPTRLLHYEGGGSRTSSTDIVCPMYMRVWDIVKIAKDPSETRPLILCE YSHAMGNSNGNIDAYWMAIDNTFGLQGGFIWDWVDEGLLKEDSDGSKFWAYGGDFGDTPNDSNFCLNGIVWPDRTIHPAVHEVKYLHQPIKISSAENMLK IENGHFFETTESLDFSWVLHGDGCILGSGPLNVPTLAPQTSHLINMELSPWFALWSACAAKEVFLSVNVKQRHETRWAKAGHLLASAQLCLPQKNVFVPN VIAFSSSPLVCERIGDSVTICKNNAWKIKVNSQLGTIDSWKVNDVELMSKGILPCFWRAPTDNDKGGFFTKPYASRWREAFLDNVSFHSSQFSIKESPDN TVEFSTVYYGVPGHLPKPDDEASESILFRVKMVCRIHESGDVVLDYEVNPKADLPPLPRVGVVFSAERSLSHVTWYGRGPFECYPDRKAAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1114 Download |
| MALAYASAMF PPSSSSHKTW EDPSFFKWRK REAHVPLRSQ DTLEGALKYW HERRNVNYLN 60 SDTAVWNDDA VRGALESAVF WSKGLPYAKS LSGYWKFLLS PSVESVPERF YDTHFDDSNW 120 AALPVPSNWQ MHGFDRPIYT NMTYPFPLNP PFVPADNPTG CYRTVFHIPK EWKGRRILLH 180 FEAVDSAFFA WVNGVPIGYS QDSRLPAEFE VTDCCHPCDS DKENVLAVQV MRWSDGSYLE 240 DQDHWRLSGI HRDVLLLSKP QIFITDYFFK ATLDDNFSLA DIEVDVEIDS HKKDREHVPT 300 LSIEATLFDN SGLSISIDAG LSYANAVNLK PKPNPTGSPC RGFHGYVLGG KIENPKLWSS 360 EHPNLYTLVV LLKDANGKLI DCESCQVGIR NVVLAHKQML VNGCPVVLRG VNRHEHHPRL 420 GKTNLEACMI EDVILMKQNN INAVRNSHYP QHPRWYELCD IFGLYVIDEA NIETHGFDDS 480 STFKHPTLEP IWANAMLDRV VSMVERDKNH ACIIVWSLGN ESSYGPNHVS MSGWIRGRDP 540 TRLLHYEGGG SRTSSTDIVC PMYMRVWDIV KIAKDPSETR PLILCEYSHA MGNSNGNIDA 600 YWMAIDNTFG LQGGFIWDWV DEGLLKEDSD GSKFWAYGGD FGDTPNDSNF CLNGIVWPDR 660 TIHPAVHEVK YLHQPIKISS AENMLKIENG HFFETTESLD FSWVLHGDGC ILGSGPLNVP 720 TLAPQTSHLI NMELSPWFAL WSACAAKEVF LSVNVKQRHE TRWAKAGHLL ASAQLCLPQK 780 NVFVPNVIAF SSSPLVCERI GDSVTICKNN AWKIKVNSQL GTIDSWKVND VELMSKGILP 840 CFWRAPTDND KGGFFTKPYA SRWREAFLDN VSFHSSQFSI KESPDNTVEF STVYYGVPGH 900 LPKPDDEASE SILFRVKMVC RIHESGDVVL DYEVNPKADL PPLPRVGVVF SAERSLSHVT 960 WYGRGPFECY PDRKAAAHVG VYESSVEELH VPYIAPVECG GRADVRWVAL RDGGGLGLYA 1020 SAHGGSPPMQ VSASYYGAAE LDRATHVHRL VKGDDIEVHL DHRHMGLGGD DSWSPCVHEQ 1080 YLLPPTRYAF SLRLCPLLPT SLCHDIYRSQ LPS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 2.0e-87 | 808 | 1094 | 288 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 1.0e-108 | 392 | 678 | 297 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 9.0e-157 | 89 | 977 | 899 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 20 | 1096 | 1119 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 74 | 1097 | 1033 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC72176.1 | 0 | 1 | 1112 | 1 | 1031 | hypothetical protein OsI_05227 [Oryza sativa Indica Group] |
| RefSeq | NP_001045421.1 | 0 | 1 | 1112 | 1 | 1116 | Os01g0952600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002266400.1 | 0 | 1 | 1111 | 1 | 1112 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002266434.1 | 0 | 1 | 1111 | 1 | 1113 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002513059.1 | 0 | 4 | 1110 | 3 | 1107 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3mv1_4 | 0 | 89 | 1095 | 81 | 1050 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3mv1_3 | 0 | 89 | 1095 | 81 | 1050 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3mv1_2 | 0 | 89 | 1095 | 81 | 1050 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3mv1_1 | 0 | 89 | 1095 | 81 | 1050 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3mv0_4 | 0 | 89 | 1095 | 81 | 1050 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DV504662 | 279 | 666 | 944 | 0 |
| FL727074 | 272 | 470 | 741 | 0 |
| HO804274 | 390 | 130 | 515 | 0 |
| EG397069 | 272 | 401 | 672 | 0 |
| HO804274 | 50 | 501 | 549 | 0.00000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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