| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g002450.1 |
| Family | GH14 |
| Protein Properties | Length: 567 Molecular Weight: 63939.2 Isoelectric Point: 6.7921 |
| Chromosome | Chromosome/Scaffold: 4 Start: 2235466 End: 2239975 |
| Description | beta-amylase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 213 | 564 | 0 |
| ASLPMGIINSHCQLVDPESVRAELRHLKSLNVDGVVVDCWWGIVEAWTPRKYEWSGYRDLFGIIKEFKLKVQVVLSFHGSGEIGSGDVLISLPKWIMEIA KENQDIFFTDREGRRNTECLSWGIDKERVLRGRTGIEVYFDFMRSFHMEFRNLSEEGLVSSIEIGLGASGELRYPSCPDTMGWKYPGIGEFQCYDRYMQK HLRQSALSRGHLFWARGPDNAGYYNSRPHETGFFCDGGDYDSYYGRFFLNWYSGVLMDHVDHVLSLASLAFDGAEIVVKVPSIYWWYRTASHAAELTAGF YNPTNRDGYSPVFRMLKKHSVILKLVCYGPEFTIQENDEAFADPEGLTWQVE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 567 Download |
| MKHPPQRDGE PSPSPPPQRR PRGFASTAGG SPRRRGERER EREKERTKLR ERHRRAITSR 60 MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVQPDGTT FRSSNQPLLP PPPPQLHGVF 120 QVASVETPAL INTLSSYVIG TPLDSQASAL QTDDSLSPSS LDSVVADRSI KTENYGNSSS 180 VSSLNCMDND QLMRSAVLFP GDYTKTPYIP VYASLPMGII NSHCQLVDPE SVRAELRHLK 240 SLNVDGVVVD CWWGIVEAWT PRKYEWSGYR DLFGIIKEFK LKVQVVLSFH GSGEIGSGDV 300 LISLPKWIME IAKENQDIFF TDREGRRNTE CLSWGIDKER VLRGRTGIEV YFDFMRSFHM 360 EFRNLSEEGL VSSIEIGLGA SGELRYPSCP DTMGWKYPGI GEFQCYDRYM QKHLRQSALS 420 RGHLFWARGP DNAGYYNSRP HETGFFCDGG DYDSYYGRFF LNWYSGVLMD HVDHVLSLAS 480 LAFDGAEIVV KVPSIYWWYR TASHAAELTA GFYNPTNRDG YSPVFRMLKK HSVILKLVCY 540 GPEFTIQEND EAFADPEGLT WQVEMF* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00197 | PLN00197 | 5.0e-101 | 209 | 565 | 362 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 1.0e-118 | 209 | 565 | 362 | + beta-amylase | ||
| PLN02801 | PLN02801 | 6.0e-132 | 208 | 563 | 358 | + beta-amylase | ||
| PLN02705 | PLN02705 | 0 | 56 | 563 | 512 | + beta-amylase | ||
| PLN02905 | PLN02905 | 0 | 56 | 563 | 523 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI29216.1 | 0 | 47 | 563 | 19 | 531 | unnamed protein product [Vitis vinifera] |
| GenBank | EAY84334.1 | 0 | 79 | 563 | 1 | 483 | hypothetical protein OsI_05709 [Oryza sativa Indica Group] |
| RefSeq | XP_002270680.1 | 0 | 40 | 563 | 70 | 589 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002304400.1 | 0 | 1 | 563 | 28 | 593 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002451472.1 | 0 | 1 | 566 | 1 | 566 | hypothetical protein SORBIDRAFT_04g002450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdq_A | 0 | 208 | 563 | 11 | 366 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| PDB | 1ukp_D | 0 | 208 | 563 | 11 | 366 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_C | 0 | 208 | 563 | 11 | 366 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_B | 0 | 208 | 563 | 11 | 366 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_A | 0 | 208 | 563 | 11 | 366 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB439624 | 285 | 255 | 539 | 0 |
| CJ908248 | 235 | 256 | 490 | 0 |
| JG649066 | 276 | 253 | 528 | 0 |
| CJ908112 | 228 | 258 | 485 | 0 |
| GO367915 | 286 | 220 | 505 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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