| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g002560.1 |
| Family | GH3 |
| Protein Properties | Length: 659 Molecular Weight: 70731.4 Isoelectric Point: 8.1975 |
| Chromosome | Chromosome/Scaffold: 4 Start: 2315920 End: 2320365 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 127 | 365 | 0 |
| LSTRLGIPIIYGIDAVHGHGNVYKATIFPHNIGLGCTRDPELAQRIGAAVALEVRATGIPYVFAPCVAVCRDPRWGRCYESFSEHPGVVRNMTSIISGFQ GEIPAPASGGRPGAPYVAGGQRNVAACSKHYVGDGGTTKGVNEGNTVASFHELMAVHMPPYYNAVIRGVSTVMVSFSSWNGVKMHANHFLVTDHLKNRLR FRGFIISDWQGLDRITTPDHADYLLSIKLGILAGVDMVM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 659 Download |
| MGVRVVVTMT TAAAAACCLL LLQLFVGCVA VAAALPTKGG GAGGDDYLRY KDPKQPLNRR 60 IDDLLRRMTL AEKIGQMSQI ERENATADVV NKYLIGSVLS GGGSVPAKNA PPEAWVKMVN 120 GMQSGALSTR LGIPIIYGID AVHGHGNVYK ATIFPHNIGL GCTRDPELAQ RIGAAVALEV 180 RATGIPYVFA PCVAVCRDPR WGRCYESFSE HPGVVRNMTS IISGFQGEIP APASGGRPGA 240 PYVAGGQRNV AACSKHYVGD GGTTKGVNEG NTVASFHELM AVHMPPYYNA VIRGVSTVMV 300 SFSSWNGVKM HANHFLVTDH LKNRLRFRGF IISDWQGLDR ITTPDHADYL LSIKLGILAG 360 VDMVMIPYTY TEFIDDLTLL VQNGTIPMSR IDDAVRRILR VKFTMGLFDN PYADTSLVGE 420 LGKQEHRDLA REAVRKSLVL LKNGKPGAKP LLPLPKKLSY GGRVLVAGSH ADDLGSQCGG 480 WTITWQGLTG NNLTAGTTIL DGIRRAVAPG TDVVYSENPD AGFVQKNKAR FDYAVVVVGE 540 PPYAETFGDN LNLTIPAPGP DIIRNVCGSI KCVVVLVSGR PLVVEPFMDI IDALVAAWLP 600 GTEGQGVSDV LFGDYGFTGK LSRTWFRSVD QLPMNVGDAH YDPLFPFGFG LQTQPSTY* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 1.0e-26 | 56 | 658 | 661 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 2.0e-34 | 463 | 651 | 205 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 1.0e-67 | 53 | 651 | 691 | + beta-D-glucoside glucohydrolase; Provisional | ||
| COG1472 | BglX | 4.0e-69 | 68 | 484 | 425 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 2.0e-80 | 69 | 401 | 337 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF07705.2 | 0 | 49 | 654 | 16 | 617 | Os02g0131400 [Oryza sativa Japonica Group] |
| RefSeq | NP_001045791.1 | 0 | 49 | 657 | 44 | 648 | Os02g0131400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130296.1 | 0 | 43 | 654 | 20 | 619 | exoglucanase1 [Zea mays] |
| RefSeq | XP_002451476.1 | 0 | 49 | 658 | 56 | 662 | hypothetical protein SORBIDRAFT_04g002570 [Sorghum bicolor] |
| RefSeq | XP_002453253.1 | 0 | 1 | 658 | 1 | 658 | hypothetical protein SORBIDRAFT_04g002560 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1j8v_A | 0 | 46 | 656 | 1 | 602 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1iex_A | 0 | 46 | 656 | 1 | 602 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1iew_A | 0 | 46 | 656 | 1 | 602 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1iev_A | 0 | 46 | 656 | 1 | 602 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1ieq_A | 0 | 46 | 656 | 1 | 602 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
