| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g002580.1 |
| Family | GH3 |
| Protein Properties | Length: 572 Molecular Weight: 61338.3 Isoelectric Point: 7.7964 |
| Chromosome | Chromosome/Scaffold: 4 Start: 2341448 End: 2347856 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 95 | 328 | 0 |
| MSSRLGIPMLYGIDAVHGHNNVYGATIFPHNIGLGCTRDPELVQKIGAAVALEVRATGIPYVFAPCIAVCRDPTWGRCYESFSEDHNLVQQMTSIISGFQ GEIPANGRLGAPFVAGQHNVAACAKHYVGDGGTTDGINENNTVATFHELLSIHMPPYYNAVIRGVSTVMVSFSSLNGVKMHANKPFVTDFLKTKLRFRGF VISDYEGIDRLTTPQHADYVLSVKLGILAGIDMN | |||
| Full Sequence |
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| Protein Sequence Length: 572 Download |
| MAGAGGGEAE HQLGDAKYKD PKQALNTRID DLLRRMTLAE KIGQMSQIER VNATADVMKN 60 YFIGSVLSGG GSVPAPNAAA AEWVKMVNEI QRGAMSSRLG IPMLYGIDAV HGHNNVYGAT 120 IFPHNIGLGC TRDPELVQKI GAAVALEVRA TGIPYVFAPC IAVCRDPTWG RCYESFSEDH 180 NLVQQMTSII SGFQGEIPAN GRLGAPFVAG QHNVAACAKH YVGDGGTTDG INENNTVATF 240 HELLSIHMPP YYNAVIRGVS TVMVSFSSLN GVKMHANKPF VTDFLKTKLR FRGFVISDYE 300 GIDRLTTPQH ADYVLSVKLG ILAGIDMNGT IPMSRIDDAV RRILRVKFTM GLFDNPYADT 360 SLVGELGKQE HRDLAREAVR KSLVLLKNGK PGAKPLLPLP KKLSYGGRVL VAGSHADDLG 420 SQCGGWTITW QGLTGNNLTA GTTILDGIRR AVAPGTDVVY SENPDAGFVQ QNKARFDYAV 480 VVVGEPPYAE TLGDNLNLTI PAPGPDVIRN VCGSIRCVVV LVSGRPLVVE PFMDIIDALV 540 HYCTADIHRA PQTLGGLTKP LGTPSTERIA R* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01915 | Glyco_hydro_3_C | 6.0e-10 | 408 | 541 | 145 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PLN03080 | PLN03080 | 2.0e-21 | 98 | 384 | 338 | + Probable beta-xylosidase; Provisional | ||
| PRK15098 | PRK15098 | 8.0e-61 | 21 | 489 | 515 | + beta-D-glucoside glucohydrolase; Provisional | ||
| COG1472 | BglX | 2.0e-69 | 36 | 429 | 418 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-79 | 37 | 346 | 332 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF07705.2 | 0 | 17 | 540 | 16 | 558 | Os02g0131400 [Oryza sativa Japonica Group] |
| RefSeq | NP_001045791.1 | 0 | 17 | 540 | 44 | 586 | Os02g0131400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002451476.1 | 0 | 7 | 540 | 46 | 599 | hypothetical protein SORBIDRAFT_04g002570 [Sorghum bicolor] |
| RefSeq | XP_002451477.1 | 0 | 1 | 571 | 1 | 571 | hypothetical protein SORBIDRAFT_04g002580 [Sorghum bicolor] |
| RefSeq | XP_002453253.1 | 0 | 17 | 540 | 49 | 595 | hypothetical protein SORBIDRAFT_04g002560 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x39_A | 0 | 18 | 540 | 5 | 541 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1x38_A | 0 | 18 | 540 | 5 | 541 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1lq2_A | 0 | 18 | 540 | 5 | 541 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1j8v_A | 0 | 18 | 540 | 5 | 541 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1iex_A | 0 | 18 | 540 | 5 | 541 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO784016 | 429 | 64 | 473 | 0 |
| FN998758 | 328 | 61 | 369 | 0 |
| DT580149 | 285 | 43 | 327 | 0 |
| FN998446 | 321 | 61 | 362 | 0 |
| HO784016 | 49 | 17 | 65 | 0.00000000003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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