| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g006610.1 |
| Family | GH28 |
| Protein Properties | Length: 463 Molecular Weight: 48602.7 Isoelectric Point: 8.3157 |
| Chromosome | Chromosome/Scaffold: 4 Start: 6616241 End: 6617828 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 119 | 450 | 0 |
| KNACDATGVQKIVIPPGNYLTGGLELKGPCKSSIIIRLDGNLLGTGDLNAYKRNWIEIENVDNLSINGHGTIDGQGSLVWNKNDCQHSYNCKVLPNSLVL DFVTNAQIRGITLANSKFFHLNIFASKNVLIDKVTVKAPGNSPNTDGIHMGDSENVTISGTTIGVGDDCISIGPGSKTIRIDGVKCGPGHGISVGSLGRY KDEKDVEDVKVKGCTLVGTTNGLRIKSYEDSKSSPKVTKFVYEDVTMDNVSYPIIIDQKYCPNNICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCAD NLPCQGVQLHNVDIKYNKSNNKTMAVCKNAVG | |||
| Full Sequence |
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| Protein Sequence Length: 463 Download |
| MAIVPNTPSP SPPCIYVLER TASLRARAPA RSLHPIPGPQ HEIHTPMAFI SNDVVAMKAA 60 AVSALLVFAA VASPAAGAPA VAVAGGAASM PAGPLDIAQL GAKGDGKSDS TPMILKAWKN 120 ACDATGVQKI VIPPGNYLTG GLELKGPCKS SIIIRLDGNL LGTGDLNAYK RNWIEIENVD 180 NLSINGHGTI DGQGSLVWNK NDCQHSYNCK VLPNSLVLDF VTNAQIRGIT LANSKFFHLN 240 IFASKNVLID KVTVKAPGNS PNTDGIHMGD SENVTISGTT IGVGDDCISI GPGSKTIRID 300 GVKCGPGHGI SVGSLGRYKD EKDVEDVKVK GCTLVGTTNG LRIKSYEDSK SSPKVTKFVY 360 EDVTMDNVSY PIIIDQKYCP NNICVRSGAS KVAVTDVVFK NIHGTSNTPE AITLNCADNL 420 PCQGVQLHNV DIKYNKSNNK TMAVCKNAVG KSFGLSKELA CI* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 9.0e-73 | 96 | 462 | 370 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-73 | 97 | 461 | 372 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-79 | 97 | 448 | 359 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-98 | 122 | 448 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-111 | 96 | 454 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD25264.1 | 0 | 89 | 462 | 49 | 422 | putative exopolygalacturonase precursor [Oryza sativa Japonica Group] |
| GenBank | EEC72677.1 | 0 | 146 | 462 | 68 | 384 | hypothetical protein OsI_06235 [Oryza sativa Indica Group] |
| RefSeq | NP_001046194.1 | 0 | 89 | 462 | 76 | 449 | Os02g0196700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141808.1 | 0 | 85 | 462 | 41 | 418 | hypothetical protein LOC100273946 [Zea mays] |
| RefSeq | XP_002451722.1 | 0 | 1 | 462 | 1 | 462 | hypothetical protein SORBIDRAFT_04g006610 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 7e-20 | 190 | 447 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-20 | 190 | 447 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-20 | 190 | 447 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-20 | 190 | 447 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 7e-20 | 190 | 447 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR798628 | 223 | 96 | 318 | 0 |
| FL818675 | 239 | 171 | 409 | 0 |
| DR809155 | 239 | 96 | 334 | 0 |
| FL822590 | 236 | 171 | 406 | 0 |
| DY399363 | 231 | 233 | 463 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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