| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g007450.1 |
| Family | PL1 |
| Protein Properties | Length: 446 Molecular Weight: 49604.5 Isoelectric Point: 9.2604 |
| Chromosome | Chromosome/Scaffold: 4 Start: 7791378 End: 7793492 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 167 | 365 | 0 |
| IIFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQLARNVIIHNLHVHDVLHSMGGLMRDSPTHVGSRTKADGDGISLFQATNVWIDHISMSNC EDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSYPQDQMMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGKAPTIISQGNRYIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 446 Download |
| METTTKQLRW SRPGSLLLVA AAFLASAALS TANIADFDEH WQKRKELAEA SVRETYRPDP 60 YNVTNSFNVA VHRATSLRRT MREMPRKHKK KGPCRATNPI DKCWRCKNDW ATDRFRLARC 120 ARGFGQATTG GLGGPIYIVT DPSDGDVVNP RPGTLRWGVI QPGPLWIIFA KSMIIQLSQE 180 LLVSSDKTID GRGAQVHIAN GAGITVQLAR NVIIHNLHVH DVLHSMGGLM RDSPTHVGSR 240 TKADGDGISL FQATNVWIDH ISMSNCEDGL IDVVQSSTGI TISNCHFTNH NDVMLFGASD 300 SYPQDQMMQI TVAFNHFGRG LVQRMPRCRW GFFHVVNNDY THWLMYAIGG GKAPTIISQG 360 NRYIAPPNIA AKVITKHYAE EGEWKNWVWH TEDDLFMNGA IFEPSGGAVQ RQINSNEWVK 420 PKPGTYVTRL TRFSGTLSCC MSKPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR04247 | NosD_copper_fam | 0.0004 | 143 | 289 | 165 | + nitrous oxide reductase family maturation protein NosD. Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase. | ||
| pfam04431 | Pec_lyase_N | 3.0e-14 | 33 | 79 | 52 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 3.0e-33 | 180 | 361 | 194 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-68 | 179 | 363 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-77 | 173 | 367 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF87417.1 | 0 | 1 | 445 | 1 | 444 | unknown [Zea mays] |
| GenBank | EAY85003.1 | 0 | 6 | 445 | 4 | 439 | hypothetical protein OsI_06363 [Oryza sativa Indica Group] |
| RefSeq | NP_001046281.1 | 0 | 6 | 445 | 4 | 446 | Os02g0214400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437204.1 | 0 | 8 | 445 | 6 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
| RefSeq | XP_002453531.1 | 0 | 1 | 445 | 1 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 98 | 438 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 98 | 438 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-26 | 126 | 354 | 19 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000005 | 181 | 383 | 128 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00000000000007 | 179 | 363 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
