| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g007730.1 |
| Family | AA7 |
| Protein Properties | Length: 538 Molecular Weight: 58890.3 Isoelectric Point: 7.6057 |
| Chromosome | Chromosome/Scaffold: 4 Start: 8089539 End: 8091401 |
| Description | cytokinin oxidase 2 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 58 | 255 | 2.1e-30 |
| FGQMVKAAPEAVFHPATPADIAELIRFSASSAAPFPVAPRGEGHSWRGQALAPGGVVVDMSSLGRGHRAPRINVSAAGAEPFVDAGGEQLWVDVLRATLR HGLAPRVWTDYLRLTVGGTLSNAGIGGQAFRHGPQIANVQELDVVTGTGEMVTCSRDVNSDLFFAALGGLGQFGVITRARIRLAPAPKRVRWVRLAYS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 538 Download |
| MANTCFLAFA ILSSVLSVVA SQLRPLPAAG LPDDLFSLGI APRIRTDRNS TAKASTDFGQ 60 MVKAAPEAVF HPATPADIAE LIRFSASSAA PFPVAPRGEG HSWRGQALAP GGVVVDMSSL 120 GRGHRAPRIN VSAAGAEPFV DAGGEQLWVD VLRATLRHGL APRVWTDYLR LTVGGTLSNA 180 GIGGQAFRHG PQIANVQELD VVTGTGEMVT CSRDVNSDLF FAALGGLGQF GVITRARIRL 240 APAPKRVRWV RLAYSDVATF TKDQELLISN RTGLIGFDYV EGQVQLNRSF IEGPKSTPFF 300 SGTDLARLAR LASRTGSVAI YYIEAAMYYT EDNAISMDKK MKALLDQLSF EKGFVFTKDV 360 TFMQFLDRVR EEESVLRSAG VWEVPHPWLN LFVPRSRILD FDNGVFKALL KDANPAGIIL 420 MYPMNKDMWD DRMTAVTPTM NDDVFYAVSM LWSALSMDDV PQLERGNKAV LDFCDQAGIE 480 CKQYLPHYTS QDGWRQHFGT KWRQIAELKA RYDPQALLSP GQRIFSKPVE ASGIASA* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR01678 | FAD_lactone_ox | 0.0005 | 64 | 261 | 201 | + sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. | ||
| COG0277 | GlcD | 3.0e-22 | 43 | 522 | 490 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 7.0e-23 | 66 | 212 | 148 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| pfam09265 | Cytokin-bind | 2.0e-143 | 244 | 525 | 285 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
| PLN02441 | PLN02441 | 0 | 25 | 532 | 510 | + cytokinin dehydrogenase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0009690 | cytokinin metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0019139 | cytokinin dehydrogenase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD17196.1 | 0 | 1 | 526 | 1 | 517 | putative cytokinin dehydrogenase 1 precursor [Oryza sativa Japonica Group] |
| DDBJ | BAD17197.1 | 0 | 1 | 528 | 1 | 516 | putative cytokinin dehydrogenase 1 precursor [Oryza sativa Japonica Group] |
| GenBank | EAY85042.1 | 0 | 1 | 528 | 1 | 516 | hypothetical protein OsI_06399 [Oryza sativa Indica Group] |
| RefSeq | XP_002451780.1 | 0 | 1 | 537 | 1 | 534 | hypothetical protein SORBIDRAFT_04g007740 [Sorghum bicolor] |
| RefSeq | XP_002453544.1 | 0 | 1 | 537 | 1 | 537 | hypothetical protein SORBIDRAFT_04g007730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s1e_A | 0 | 24 | 526 | 14 | 516 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
| PDB | 3s1c_A | 0 | 24 | 526 | 14 | 516 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
| PDB | 3dq0_A | 0 | 24 | 526 | 14 | 516 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
| PDB | 3c0p_A | 0 | 24 | 526 | 14 | 516 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
| PDB | 3bw7_A | 0 | 24 | 526 | 14 | 516 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cytokinins degradation | RXN-4621 | EC-1.5.99 | isopentenyladenine:FAD oxidoreductase |
| cytokinins degradation | RXN-4641 | EC-1.5.99 | isopentenyl adenosine:FAD oxidoreductase |
| cytokinins degradation | RXN-4661 | EC-1.5.99 | trans-zeatin:FAD oxidoreductase |
| cytokinins degradation | RXN-4662 | EC-1.5.99 | cis-zeatin:FAD oxidoreductase |
| cytokinins degradation | RXN-4681 | EC-1.5.99 | trans-zeatin riboside:FAD oxidoreductase |
