| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g009310.1 |
| Family | GH28 |
| Protein Properties | Length: 449 Molecular Weight: 48193.6 Isoelectric Point: 8.9482 |
| Chromosome | Chromosome/Scaffold: 4 Start: 11593379 End: 11596234 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 423 | 0 |
| RRRGGTTLHVPAGTWLTGSFNLTSHMTLFLARGAVLKATQDTRRWPLMEPLPSYGRGRELPGARYASFIHGNGLRDVAITGDKGVIDGQGEVWWNMWRRR TLEHTRPNLVEFMHSTGIHISNIVLKNSPFWNIHPVYCDNVVVTNMMILAPHDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAIKSGWDEYGIAYGRPSS GITIRRVRGSSPFSGIAIGSEASGGVRDVLVEDCSIFDSGYGIHIKTNVGRGGYIRNVTVDNVRMSGVRISGVRIAGDVGDHPDAHFSQLAVPLVDAVRI SNVWGVNVQHPGSLEGIRSSPFTRICLSNVKLFGWRKNDAAWRCRDVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MAASWRGPVV AVLCAVVVLH AVAAAAAAAT SCAGVAPAKH RPEAISITDF GGVGDGRTLN 60 TWAFRKAVYR IQHQRRRGGT TLHVPAGTWL TGSFNLTSHM TLFLARGAVL KATQDTRRWP 120 LMEPLPSYGR GRELPGARYA SFIHGNGLRD VAITGDKGVI DGQGEVWWNM WRRRTLEHTR 180 PNLVEFMHST GIHISNIVLK NSPFWNIHPV YCDNVVVTNM MILAPHDSPN TDGIDPDSSS 240 NVCIEDSYIS TGDDLVAIKS GWDEYGIAYG RPSSGITIRR VRGSSPFSGI AIGSEASGGV 300 RDVLVEDCSI FDSGYGIHIK TNVGRGGYIR NVTVDNVRMS GVRISGVRIA GDVGDHPDAH 360 FSQLAVPLVD AVRISNVWGV NVQHPGSLEG IRSSPFTRIC LSNVKLFGWR KNDAAWRCRD 420 VRGAALGVQP SPCAELATSF ASAGSSCS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-24 | 39 | 434 | 411 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 9.0e-28 | 44 | 443 | 420 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 8.0e-28 | 42 | 408 | 384 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-32 | 142 | 421 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 4.0e-53 | 44 | 370 | 357 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN33336.1 | 0 | 2 | 448 | 3 | 451 | unknown [Zea mays] |
| GenBank | ACN36471.1 | 0 | 100 | 448 | 1 | 347 | unknown [Zea mays] |
| GenBank | EAY85246.1 | 0 | 26 | 442 | 24 | 438 | hypothetical protein OsI_06620 [Oryza sativa Indica Group] |
| RefSeq | NP_001046468.1 | 0 | 26 | 442 | 24 | 438 | Os02g0256100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002451891.1 | 0 | 1 | 448 | 1 | 448 | hypothetical protein SORBIDRAFT_04g009310 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8.99999e-40 | 44 | 410 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8.99999e-40 | 44 | 410 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8.99999e-40 | 44 | 410 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8.99999e-40 | 44 | 410 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-20 | 79 | 422 | 39 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
