| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g011210.1 |
| Family | CE8 |
| Protein Properties | Length: 564 Molecular Weight: 59327.4 Isoelectric Point: 8.5825 |
| Chromosome | Chromosome/Scaffold: 4 Start: 16558561 End: 16560865 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 243 | 545 | 0 |
| DIVVAKDGTGTHATIADAVKAAPECSERRTVIYVKAGRYDENVKVGMNKTNLVFVGDGKGVTVVAGNRSVADNYTTFRTATFAASGFGFMMLDMTVENWA GPARHQAVALRASADRAVVHRCGIAGYQDTLYAHSNRQFYRDCDVYGTVDFVFGNAAAVLQRCDLWARVPLPGQRNTVTAQSRNESCQRTGIVLHGCRLL AAPASEPDLILAPPTTYLGRPWKPFSRVVVMLSYIGPHVPPQGWLEWNATSDTPYALDRLYFGEYMNNGPGAGLAGRVPWHGHRAINSTAEAERFTVARF IDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 564 Download |
| MDHHLLARRL GAPPVLLLIL SCLALILAGC SCSCSSAHAA SAPRPPVFAF PAAAAKAKAQ 60 HAVARHHESR LRAALDAAAT RVGEALGALA ATSSPTLAAA AAREDCAELL DEALQLLAGA 120 RAATRGDALT WLSAALTNHD TCADSLAEAG APLHAHAHLA AARAVVRDSL ATMYASSTTT 180 TAATATGTTE DAGGAAGLVR SCCNKNETTT RRQGGPCRFP RWVPARDRRL LLAPAASLAG 240 TADIVVAKDG TGTHATIADA VKAAPECSER RTVIYVKAGR YDENVKVGMN KTNLVFVGDG 300 KGVTVVAGNR SVADNYTTFR TATFAASGFG FMMLDMTVEN WAGPARHQAV ALRASADRAV 360 VHRCGIAGYQ DTLYAHSNRQ FYRDCDVYGT VDFVFGNAAA VLQRCDLWAR VPLPGQRNTV 420 TAQSRNESCQ RTGIVLHGCR LLAAPASEPD LILAPPTTYL GRPWKPFSRV VVMLSYIGPH 480 VPPQGWLEWN ATSDTPYALD RLYFGEYMNN GPGAGLAGRV PWHGHRAINS TAEAERFTVA 540 RFIDGASWLP ATGVSFVAGL SLL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 0.003 | 127 | 144 | 18 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-134 | 218 | 560 | 343 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 9.0e-165 | 219 | 562 | 345 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 3.0e-172 | 243 | 545 | 303 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABJ99595.1 | 0 | 16 | 562 | 31 | 580 | pectinesterase inhibitor [Lycoris aurea] |
| GenBank | EAY85410.1 | 0 | 4 | 562 | 3 | 553 | hypothetical protein OsI_06789 [Oryza sativa Indica Group] |
| GenBank | EAZ22625.1 | 0 | 103 | 562 | 20 | 479 | hypothetical protein OsJ_06296 [Oryza sativa Japonica Group] |
| RefSeq | NP_001046581.1 | 0 | 4 | 562 | 3 | 554 | Os02g0288100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002453720.1 | 0 | 1 | 563 | 1 | 563 | hypothetical protein SORBIDRAFT_04g011210 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 242 | 560 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 243 | 560 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 2e-20 | 239 | 466 | 1 | 247 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-20 | 239 | 466 | 1 | 247 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-20 | 239 | 466 | 1 | 247 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
