| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g020230.1 |
| Family | CBM43 |
| Protein Properties | Length: 193 Molecular Weight: 19524.2 Isoelectric Point: 7.6852 |
| Chromosome | Chromosome/Scaffold: 4 Start: 47480585 End: 47483680 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 38 | 121 | 4.2e-33 |
| WCIARSGASDKALQSALDYACGPAGGADCAPIQSTGLCYLPNTLAAHASYAFNSIFQRSRAAPGACDFAGTATVTLTDPSYGSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 193 Download |
| MRRRGRRLPA ALWLDAAVTL AALVVLVLLV ARPAGAAWCI ARSGASDKAL QSALDYACGP 60 AGGADCAPIQ STGLCYLPNT LAAHASYAFN SIFQRSRAAP GACDFAGTAT VTLTDPSYGS 120 CTYPSSPSTA GQTGSPGSIS MPGTPTPKGT GSTGGLSPPD VDSTDSNAEP LATTSLPSLA 180 LSCFMYMFLQ LW* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-11 | 38 | 110 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-28 | 38 | 123 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN33807.1 | 0 | 1 | 117 | 1 | 109 | unknown [Zea mays] |
| DDBJ | BAD23212.1 | 9.80909e-45 | 36 | 117 | 32 | 113 | glycosyl hydrolase-like [Oryza sativa Japonica Group] |
| DDBJ | BAH91705.1 | 0 | 36 | 192 | 32 | 189 | Os02g0503300 [Oryza sativa Japonica Group] |
| RefSeq | NP_001148424.1 | 0 | 1 | 192 | 1 | 187 | glucan endo-1,3-beta-glucosidase 4 [Zea mays] |
| RefSeq | XP_002452133.1 | 0 | 1 | 192 | 1 | 192 | hypothetical protein SORBIDRAFT_04g020230 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 2e-22 | 34 | 125 | 9 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
