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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb04g021180.1 |
Family | GT47 |
Protein Properties | Length: 433 Molecular Weight: 48592.2 Isoelectric Point: 8.2126 |
Chromosome | Chromosome/Scaffold: 4 Start: 49843838 End: 49846363 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 65 | 360 | 0 |
RLKVFIYDLPSKYNKRIVTKDPRCLHHMFAAEIFMHRFLLSSAVRTLNPEEADWFYTPVYTTCDLTPAGLPLPFKSPRMMRSAIKFISNKWPFWNRTDGA DHFFVVPHDFGACFHYQEEKATERGILPMLRRATLVQTFGQKNHVCLKEGSIIIPPYAPPQKMQAHLVPPDTPRSIFVYFRGLFYDNGNDPEGGYYARGA RASLWENFKNNPLFDISTDHPVTYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEDIGVFVDEEDVPKLDSILTSI |
Full Sequence |
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Protein Sequence Length: 433 Download |
MTRARAVWRP AAVVLLAVAS LSCVLTPPLV SAAAGAEVAG GVARRNTERI AGSAGDVLED 60 NPIGRLKVFI YDLPSKYNKR IVTKDPRCLH HMFAAEIFMH RFLLSSAVRT LNPEEADWFY 120 TPVYTTCDLT PAGLPLPFKS PRMMRSAIKF ISNKWPFWNR TDGADHFFVV PHDFGACFHY 180 QEEKATERGI LPMLRRATLV QTFGQKNHVC LKEGSIIIPP YAPPQKMQAH LVPPDTPRSI 240 FVYFRGLFYD NGNDPEGGYY ARGARASLWE NFKNNPLFDI STDHPVTYYE DMQRAVFCLC 300 PLGWAPWSPR LVEAVVFGCI PVIIADDIVL PFADAIPWED IGVFVDEEDV PKLDSILTSI 360 PIENILRKQR LLANPSMKKA MLFPQPAQPR DAFHQILNGL ARKLPHMQSV YLQPGEKHLN 420 WTAGPAGDLK PW* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 5.0e-82 | 65 | 360 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD26319.1 | 0 | 46 | 432 | 47 | 433 | putative pectin-glucuronyltransferase [Oryza sativa Japonica Group] |
GenBank | EAZ23244.1 | 0 | 46 | 432 | 47 | 433 | hypothetical protein OsJ_06939 [Oryza sativa Japonica Group] |
RefSeq | NP_001052673.1 | 0 | 39 | 432 | 27 | 420 | Os04g0398600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002446363.1 | 0 | 44 | 432 | 42 | 430 | hypothetical protein SORBIDRAFT_06g014730 [Sorghum bicolor] |
RefSeq | XP_002452172.1 | 0 | 1 | 432 | 1 | 432 | hypothetical protein SORBIDRAFT_04g021180 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |