| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g026370.1 |
| Family | AA3 |
| Protein Properties | Length: 774 Molecular Weight: 82287.6 Isoelectric Point: 7.6485 |
| Chromosome | Chromosome/Scaffold: 4 Start: 56146546 End: 56149136 |
| Description | Long-chain fatty alcohol dehydrogenase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 255 | 764 | 0 |
| VECDVVIVGSGCGGGVAAAVLAGAGHKVVVIEKGNYFTARDYTAIEAPSMEQLYEGGGAVSTLSGSALVLAGSTVGGGTAVNWSACIKTPDDVREEWASD QGLPLFATDEYAAAMDKVFERLGVTAGCAEEGLQNKVLRKGCEKLGYKVESVSRNSSEGHYCGSCGYGCRSGDKRGTDRTWLVDAVSRGAVILTGCKAEK LLLERTGTGGAESRAKRCVGVVARSTNPTITRTLEVRARVTVSACGSLLTPVLLRGSGLSNRHIGKNLHLHPTALVWGYFPDTMPDLKGKTYEGGIITSL HKVEGAPGAPARAILETPAMGLAGAGTLFPWVSGSDLKERMLRYGRTVHLFSLVRDRGSGSVLGERRVAYHLDATDAENMREGLRRALRILAAAGAAEIG THRSDGQRFACRGATEAALEEFLDGVDVVRGPQSKAEAWSLCCTAHQMGSCRMGVTARDGAVDARGESWEVESLYVCDGSVLPSAVGVNPMVTIQSVAYC LATGIAESLR | |||
| Full Sequence |
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| Protein Sequence Length: 774 Download |
| MGAGDKRGHP LLRGGAANRE RYTHGFSASQ MTALTALCGA LVPSLPPDRR NGHQQQEDGG 60 RGGGSGGNKD KVVEEFLLAS AADPPVPGEV AEQMSRKCLP EALALVRTVL WLLGTRLGSL 120 ALCGARSCLS WRFPFVRRFD ELPLEQREAA LRRWSRQTLL LPLRMFFVII KAICLHVFYS 180 WTDENSKNPH WRAIGYSPPL ADDEPAPAES ERPEKRPLDD GVVETTKETD ASLPALLAAK 240 GLTVADDSAQ NVCRVECDVV IVGSGCGGGV AAAVLAGAGH KVVVIEKGNY FTARDYTAIE 300 APSMEQLYEG GGAVSTLSGS ALVLAGSTVG GGTAVNWSAC IKTPDDVREE WASDQGLPLF 360 ATDEYAAAMD KVFERLGVTA GCAEEGLQNK VLRKGCEKLG YKVESVSRNS SEGHYCGSCG 420 YGCRSGDKRG TDRTWLVDAV SRGAVILTGC KAEKLLLERT GTGGAESRAK RCVGVVARST 480 NPTITRTLEV RARVTVSACG SLLTPVLLRG SGLSNRHIGK NLHLHPTALV WGYFPDTMPD 540 LKGKTYEGGI ITSLHKVEGA PGAPARAILE TPAMGLAGAG TLFPWVSGSD LKERMLRYGR 600 TVHLFSLVRD RGSGSVLGER RVAYHLDATD AENMREGLRR ALRILAAAGA AEIGTHRSDG 660 QRFACRGATE AALEEFLDGV DVVRGPQSKA EAWSLCCTAH QMGSCRMGVT ARDGAVDARG 720 ESWEVESLYV CDGSVLPSAV GVNPMVTIQS VAYCLATGIA ESLRRGPVPE KIQ* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05199 | GMC_oxred_C | 7.0e-17 | 698 | 755 | 58 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 1.0e-17 | 326 | 761 | 470 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 3.0e-72 | 304 | 527 | 227 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN27562.1 | 0 | 1 | 771 | 1 | 767 | unknown [Zea mays] |
| GenBank | EEC73620.1 | 0 | 6 | 763 | 11 | 765 | hypothetical protein OsI_08118 [Oryza sativa Indica Group] |
| RefSeq | NP_001148058.1 | 0 | 1 | 771 | 1 | 767 | oxidoreductase [Zea mays] |
| RefSeq | XP_002454188.1 | 0 | 1 | 773 | 1 | 773 | hypothetical protein SORBIDRAFT_04g026370 [Sorghum bicolor] |
| RefSeq | XP_002454190.1 | 0 | 1 | 768 | 1 | 775 | hypothetical protein SORBIDRAFT_04g026390 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1kdg_B | 0.000003 | 252 | 528 | 3 | 286 | A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase |
| PDB | 1kdg_A | 0.000003 | 252 | 528 | 3 | 286 | A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase |
| PDB | 1naa_B | 0.000007 | 258 | 528 | 4 | 281 | A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam |
| PDB | 1naa_A | 0.000007 | 258 | 528 | 4 | 281 | A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam |
| PDB | 3t37_A | 0.00003 | 256 | 738 | 17 | 499 | A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794753 | 759 | 9 | 763 | 0 |
| HO779224 | 452 | 227 | 678 | 0 |
| CB676542 | 254 | 322 | 574 | 0 |
| EE016105 | 233 | 301 | 533 | 0 |
| EE162194 | 273 | 184 | 456 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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