| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g028060.1 |
| Family | GT5 |
| Protein Properties | Length: 705 Molecular Weight: 76255 Isoelectric Point: 6.4744 |
| Chromosome | Chromosome/Scaffold: 4 Start: 57999747 End: 58003544 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 214 | 697 | 0 |
| NVVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEARDLGVRKRYRVAGQDSEVTYFHSYIDGVDFVFIEAPPFRHRHNNIYGGERL DILKRMILFCKAAVEVPWYAPCGGTVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYARSVLVIHNIAHQGRGPVDDFVNFDLPEHYIDHFKLYDNI GGDHSNVFAAGLKAADRVVTVSNGYLWELKTSEGGWGLHDIINQNDWKLQGIVNGIDMSEWNPAVDVHLHSDGYTNYTFETLDTGKRQCKAALQRQLGLQ VRDDVPLIGFIGRLDGQKGVDLIGDAIHWIAGQDVQLVMLGTGRPDLEDMLRRCEAEHNDKVRAWVGFSVPLAHRITAGADVLLMPSRFEPCGLNQLYAM AYGTVPVVHAVGGLRDTVAPFDPFNDTGLGWTFDRAEANRMIDALHHCLNTYRNFKESWRGLQERGMAQDLSWDHAAVLYEDVL | |||
| Full Sequence |
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| Protein Sequence Length: 705 Download |
| MSAAISSSSS AFLLLIASSS PRRRRGRVGA ALRSYGYSGA ELRLHWARRA PSRDAAAVVV 60 RAAAAPAGGE EGEEAAAAGM SSSSKGVAVQ GSKAKAVDST SPPKPVTSAT KQSPSAANQN 120 GTVGSSSASK SATPVSELKA ETSAPVTKTE TDASAKVEEP KPAVDDAKPV ESIGVAEPVD 180 AKVDVAAATD VEASAADDSE DKKPGPLAGP NVMNVVVVAS ECAPFCKTGG LGDVVGALPK 240 ALARRGHRVM VVIPRYGEYA EARDLGVRKR YRVAGQDSEV TYFHSYIDGV DFVFIEAPPF 300 RHRHNNIYGG ERLDILKRMI LFCKAAVEVP WYAPCGGTVY GDGNLVFIAN DWHTALLPVY 360 LKAYYRDNGL MQYARSVLVI HNIAHQGRGP VDDFVNFDLP EHYIDHFKLY DNIGGDHSNV 420 FAAGLKAADR VVTVSNGYLW ELKTSEGGWG LHDIINQNDW KLQGIVNGID MSEWNPAVDV 480 HLHSDGYTNY TFETLDTGKR QCKAALQRQL GLQVRDDVPL IGFIGRLDGQ KGVDLIGDAI 540 HWIAGQDVQL VMLGTGRPDL EDMLRRCEAE HNDKVRAWVG FSVPLAHRIT AGADVLLMPS 600 RFEPCGLNQL YAMAYGTVPV VHAVGGLRDT VAPFDPFNDT GLGWTFDRAE ANRMIDALHH 660 CLNTYRNFKE SWRGLQERGM AQDLSWDHAA VLYEDVLVKA KYQW* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-87 | 213 | 693 | 513 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 3.0e-137 | 213 | 695 | 491 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 1.0e-170 | 213 | 697 | 497 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 213 | 700 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 214 | 697 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86845.1 | 0 | 1 | 704 | 1 | 704 | starch synthase IIb precursor [Sorghum bicolor] |
| GenBank | ACN31779.1 | 0 | 1 | 704 | 1 | 698 | unknown [Zea mays] |
| RefSeq | NP_001104880.1 | 0 | 1 | 704 | 1 | 698 | starch synthase isoform zSTSII-2 [Zea mays] |
| RefSeq | NP_001106014.1 | 0 | 28 | 704 | 29 | 704 | starch synthase IIb-2 precursor [Zea mays] |
| RefSeq | XP_002452556.1 | 0 | 1 | 704 | 1 | 704 | hypothetical protein SORBIDRAFT_04g028060 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 213 | 698 | 10 | 509 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
| PDB | 3vue_A | 0 | 213 | 698 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 213 | 701 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 213 | 703 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 213 | 703 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 387 | 705 | 0 |
| HO777841 | 189 | 206 | 394 | 0 |
| HO781048 | 394 | 312 | 705 | 0 |
| HO445868 | 438 | 268 | 705 | 0 |
| HO781048 | 38 | 275 | 312 | 1.2 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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