| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g031450.1 |
| Family | CE8 |
| Protein Properties | Length: 350 Molecular Weight: 37459.5 Isoelectric Point: 7.1121 |
| Chromosome | Chromosome/Scaffold: 4 Start: 61416757 End: 61418792 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 58 | 337 | 0 |
| CVDKNGCCNFTTVQAAVDAVPDNGQKRSIVWIIGIFVEKVVVRKPNITFQGQGLKVSMIVWNDTATTAGNTPNSASVHIDAPGFVAKNMSFMNSAPAPKP GAEGAQAVAMRVSGDRAAFWGCGFFGAQDTLHDDQNRHYFKECLIQGSIDFIFGDARSLHENCTLHSVAQELPQGQRSINGAITAQGRRFADNNTGFSFV GCTIGGSGWILLGRAWQAYSRVIFAYTYMPAAIVATAGTVFYGEFDCTGDGANMAGRVSYARKLNKMQAQPFLTTAFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 350 Download |
| MIVSVAGALV LTSLLLSSAI GRPSHLLSNV SRVDDSTDCQ HLPLSFSPSE TASTVIFCVD 60 KNGCCNFTTV QAAVDAVPDN GQKRSIVWII GIFVEKVVVR KPNITFQGQG LKVSMIVWND 120 TATTAGNTPN SASVHIDAPG FVAKNMSFMN SAPAPKPGAE GAQAVAMRVS GDRAAFWGCG 180 FFGAQDTLHD DQNRHYFKEC LIQGSIDFIF GDARSLHENC TLHSVAQELP QGQRSINGAI 240 TAQGRRFADN NTGFSFVGCT IGGSGWILLG RAWQAYSRVI FAYTYMPAAI VATAGTVFYG 300 EFDCTGDGAN MAGRVSYARK LNKMQAQPFL TTAFIDGPEW LKPFNDSLM* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 4.0e-86 | 47 | 342 | 310 | + putative pectinesterase | ||
| PLN02634 | PLN02634 | 2.0e-96 | 59 | 343 | 306 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 5.0e-97 | 59 | 343 | 300 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 8.0e-111 | 59 | 343 | 305 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 2.0e-160 | 39 | 346 | 322 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC83093.1 | 0 | 51 | 349 | 81 | 392 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
| GenBank | EEE68230.1 | 0 | 51 | 349 | 206 | 517 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
| RefSeq | XP_002445213.1 | 0 | 38 | 349 | 67 | 397 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
| RefSeq | XP_002454459.1 | 0 | 21 | 349 | 21 | 349 | hypothetical protein SORBIDRAFT_04g031450 [Sorghum bicolor] |
| RefSeq | XP_002521065.1 | 0 | 39 | 345 | 76 | 395 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 1.99993e-41 | 58 | 342 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 4e-30 | 58 | 342 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.00000000000005 | 67 | 222 | 44 | 217 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.0000000000002 | 67 | 224 | 18 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.0000000000002 | 67 | 224 | 18 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
