| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g034530.1 |
| Family | CBM43 |
| Protein Properties | Length: 492 Molecular Weight: 50920.5 Isoelectric Point: 8.0014 |
| Chromosome | Chromosome/Scaffold: 4 Start: 64363189 End: 64366923 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 403 | 485 | 9e-33 |
| WCVANAIVGEQRLQAALDYACGPGGADCKAIQPGAACFEPNTMVAHASYAFNDYYQRKGRSIGTCDFAGAAYVVNQAPKMGKC | |||
| GH17 | 30 | 351 | 0 |
| VGVNYGRVANNLPNPAAVVQLLKQQGVGQVKLYDADPTVLRALANTGIKVVVALPNEQLAAAASRASYALLWVRRNVAAYYPATQIHGIAVGNEVFASAK NVTAQLVPAMTNVHAALARLGLDNAVKVSSPIALTALASSYPSSAGAFREDLAQAVMKPMLDFLAQTGSYLMVNAYPFFAYSGNAGDISLDYALFRPNAG VLDAGNGLKYYSLLDAQLDAVFAAVSKLGNYNAVRVVVSETGWPSKGDANEAGASAANAAAYNGNLARRVLSGNAGTPRRPDADIDVYLFALFNENQKPG PTSERNYGVFYPNQQKVYDVDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 492 Download |
| MASLRRLPVA VLLAVAVPLL FLCPAEAGTV GVNYGRVANN LPNPAAVVQL LKQQGVGQVK 60 LYDADPTVLR ALANTGIKVV VALPNEQLAA AASRASYALL WVRRNVAAYY PATQIHGIAV 120 GNEVFASAKN VTAQLVPAMT NVHAALARLG LDNAVKVSSP IALTALASSY PSSAGAFRED 180 LAQAVMKPML DFLAQTGSYL MVNAYPFFAY SGNAGDISLD YALFRPNAGV LDAGNGLKYY 240 SLLDAQLDAV FAAVSKLGNY NAVRVVVSET GWPSKGDANE AGASAANAAA YNGNLARRVL 300 SGNAGTPRRP DADIDVYLFA LFNENQKPGP TSERNYGVFY PNQQKVYDVD FVLGGGGNPS 360 GGGSQGNNGL GWQENGGPSS GSGSTSTSGN PPSGVKVTTG EAWCVANAIV GEQRLQAALD 420 YACGPGGADC KAIQPGAACF EPNTMVAHAS YAFNDYYQRK GRSIGTCDFA GAAYVVNQAP 480 KMGKCDLPST V* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 5.0e-21 | 403 | 474 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-36 | 403 | 485 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-90 | 30 | 351 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF79018.1 | 0 | 24 | 491 | 23 | 481 | unknown [Zea mays] |
| GenBank | ACF88240.1 | 0 | 20 | 491 | 19 | 481 | unknown [Zea mays] |
| RefSeq | NP_001048260.1 | 0 | 10 | 491 | 9 | 488 | Os02g0771700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001136613.1 | 0 | 20 | 491 | 19 | 481 | hypothetical protein LOC100216736 [Zea mays] |
| RefSeq | XP_002454630.1 | 0 | 1 | 491 | 1 | 491 | hypothetical protein SORBIDRAFT_04g034530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 30 | 351 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 30 | 351 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 30 | 351 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 30 | 351 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 30 | 351 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
