| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g035020.1 |
| Family | GH28 |
| Protein Properties | Length: 501 Molecular Weight: 54453.9 Isoelectric Point: 9.4423 |
| Chromosome | Chromosome/Scaffold: 4 Start: 64829445 End: 64832391 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 113 | 462 | 0 |
| ERGGGQLNVPPGRWLTAPFNLTSHMTLFLAEGAEILGITDEKYWPLMPALPSYGYGRERKGPRFGSLIHGQNLKDVVITGHNGSINGQGEVWWMKHRRRI LNNTRPPLVQLMWSKDIIIANITLRNSPFWHLHPYDCTNVTVSNVTILSPVSGAPNTDGIDPDSSQDVLIENCYISVGDDAIAIKSGWDQYGIAYGRPSS NISIRNVNARSLVSAGISIGSEMSGGVANVTVENVRIWESRRGVRIKTATGRGGYIRNISYRNITFDNVRAGIVIKVDYNEHADDGYDRTAFPDITSISF KGIHGRGVRVPVRAHGSDVIPIRDISFQDMSVGISYKKKHIFQCSYVEGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 501 Download |
| MVETGGGRLH QRRGAVAFVA ANKALLAAAW VVGFALVFLW QSASMSFGSA GAGGAAGGGF 60 LRLLSAPPPP PRPAPRLRPT AYNLTDFGAV GDGRAVNTEA FERAVETIAA LAERGGGQLN 120 VPPGRWLTAP FNLTSHMTLF LAEGAEILGI TDEKYWPLMP ALPSYGYGRE RKGPRFGSLI 180 HGQNLKDVVI TGHNGSINGQ GEVWWMKHRR RILNNTRPPL VQLMWSKDII IANITLRNSP 240 FWHLHPYDCT NVTVSNVTIL SPVSGAPNTD GIDPDSSQDV LIENCYISVG DDAIAIKSGW 300 DQYGIAYGRP SSNISIRNVN ARSLVSAGIS IGSEMSGGVA NVTVENVRIW ESRRGVRIKT 360 ATGRGGYIRN ISYRNITFDN VRAGIVIKVD YNEHADDGYD RTAFPDITSI SFKGIHGRGV 420 RVPVRAHGSD VIPIRDISFQ DMSVGISYKK KHIFQCSYVE GRVVRPVFPK PCENLDIYDE 480 QGQLVKRAVA LNSTELDYDI * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-30 | 80 | 391 | 330 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-33 | 86 | 472 | 401 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-37 | 81 | 444 | 375 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-41 | 180 | 459 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-67 | 80 | 436 | 395 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY87758.1 | 0 | 1 | 488 | 1 | 506 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
| RefSeq | NP_001140630.1 | 0 | 1 | 500 | 1 | 495 | hypothetical protein LOC100272705 [Zea mays] |
| RefSeq | XP_002324728.1 | 0 | 8 | 500 | 17 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 8 | 500 | 17 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002452925.1 | 0 | 1 | 500 | 1 | 500 | hypothetical protein SORBIDRAFT_04g035020 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 75 | 441 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 75 | 441 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 75 | 441 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 75 | 441 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-25 | 126 | 446 | 52 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
