| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g035200.1 |
| Family | CE8 |
| Protein Properties | Length: 576 Molecular Weight: 59193.4 Isoelectric Point: 7.4713 |
| Chromosome | Chromosome/Scaffold: 4 Start: 65039099 End: 65042209 |
| Description | pectin methylesterase 61 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 256 | 559 | 0 |
| AVVALDGSGTHTSINEAIAEVTAEVDTEASGGRGVGISRRRKVIHVKAGRYEESVSISYQQADVMLVGDGKGKTIIDGDRSVAGGYTTWSSATVAAMGAG FIAKGVSILNSAGPGQGQAVALLVSGDRSVVYQCEVKGHQDTLFAHSNRQFYGDTDVSGTVDFIFGNAAAVLQRCGIQARRPRPGQQDVVTAQGRADPNQ NTGFSIHRCRVTGAPDLGETPVYLGRPWRRYARVAVMATSLDGSVAPAGWLQWSGQPAPGTLYYGEYRNTGAGAATAGRVTWTGVHTSMSTEDAAGFTVA NFIM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 576 Download |
| MATFGRARPA LPVIAWSCAM ATALALATVM PVTSGKEDEA AAVSTIAAAS PASTTNVTLL 60 CRSTPYPRAC ETALTSAEAR SARGPFAASV QFAMARATTT RALARNLSSS AAAPAPPAPS 120 SGMHDCAELL GISLAQLRDA LAGSAADADG ATTWLSAALT NQGTCRDSLA AVPLPDDPAG 180 SDAVRRQVAA LARFISTALA LHVGKVKKGE TAAAAAGVPP SREGTAFPSW LSENDRKLLE 240 SLSPATTNDI VVTPDAVVAL DGSGTHTSIN EAIAEVTAEV DTEASGGRGV GISRRRKVIH 300 VKAGRYEESV SISYQQADVM LVGDGKGKTI IDGDRSVAGG YTTWSSATVA AMGAGFIAKG 360 VSILNSAGPG QGQAVALLVS GDRSVVYQCE VKGHQDTLFA HSNRQFYGDT DVSGTVDFIF 420 GNAAAVLQRC GIQARRPRPG QQDVVTAQGR ADPNQNTGFS IHRCRVTGAP DLGETPVYLG 480 RPWRRYARVA VMATSLDGSV APAGWLQWSG QPAPGTLYYG EYRNTGAGAA TAGRVTWTGV 540 HTSMSTEDAA GFTVANFIMG DSWLDATGVK YTSGL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02713 | PLN02713 | 3.0e-105 | 153 | 575 | 443 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 9.0e-108 | 125 | 575 | 469 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 5.0e-112 | 122 | 575 | 468 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 6.0e-128 | 255 | 561 | 311 | + Pectinesterase. | ||
| PLN02170 | PLN02170 | 2.0e-129 | 62 | 575 | 516 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD19539.1 | 0 | 1 | 575 | 1 | 571 | putative pectinesterase [Oryza sativa Japonica Group] |
| RefSeq | NP_001048322.1 | 0 | 1 | 575 | 11 | 581 | Os02g0783000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148248.1 | 0 | 37 | 575 | 53 | 578 | pectinesterase-2 [Zea mays] |
| RefSeq | XP_002449226.1 | 0 | 24 | 560 | 8 | 569 | hypothetical protein SORBIDRAFT_05g006610 [Sorghum bicolor] |
| RefSeq | XP_002454668.1 | 0 | 1 | 575 | 1 | 575 | hypothetical protein SORBIDRAFT_04g035200 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 252 | 575 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 252 | 575 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 3e-18 | 298 | 532 | 36 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 3e-18 | 298 | 532 | 36 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-17 | 298 | 529 | 36 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
