| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g037730.1 |
| Family | CE8 |
| Protein Properties | Length: 415 Molecular Weight: 44459.4 Isoelectric Point: 5.2268 |
| Chromosome | Chromosome/Scaffold: 4 Start: 67293396 End: 67295042 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 105 | 340 | 0 |
| NSIGEAIAKIPDGNTKRYIISIQPGAVYREKLFLGKNKPFVTLASTSPEAPAIIAWNDTAATLGKDGKPLGAEGSSSVTIESDFFIASGILFRNDAPEPE LKRDNQGKIGEVTSATMAPALRVAGSKATFYKCTVDGGHGALYDHKGLHYYKSCTINGTFDFIFGNARSFYEDCNIVSKSATDYLGDLPVAKPPLTLSPA AADGGFSFKTCTITGQSFIFLGRAGWPVVYSYTNIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 415 Download |
| MVQLLVLPSS SLILLLVLLM MAPSSSCAQE QEQEQQQLKQ QMQEHQQQHT MLQGWIKEQV 60 AKDAAAGCTC GKKDAALSAA EANRVVLHVE PADDSSTSDP AIYLNSIGEA IAKIPDGNTK 120 RYIISIQPGA VYREKLFLGK NKPFVTLAST SPEAPAIIAW NDTAATLGKD GKPLGAEGSS 180 SVTIESDFFI ASGILFRNDA PEPELKRDNQ GKIGEVTSAT MAPALRVAGS KATFYKCTVD 240 GGHGALYDHK GLHYYKSCTI NGTFDFIFGN ARSFYEDCNI VSKSATDYLG DLPVAKPPLT 300 LSPAAADGGF SFKTCTITGQ SFIFLGRAGW PVVYSYTNIG YDLFPLIVSG SDDSQAGAKF 360 QFNREFAPFL FISYKNYGVP SGAVGINKTD VAPFLGTQFV SGDNWILSIP PATE* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 2.0e-36 | 110 | 406 | 317 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 2.0e-41 | 106 | 406 | 321 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 6.0e-47 | 110 | 406 | 310 | + pectinesterase | ||
| PLN02665 | PLN02665 | 3.0e-48 | 71 | 412 | 361 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 3.0e-53 | 106 | 407 | 315 | + pectinesterase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA95298.2 | 0 | 39 | 411 | 83 | 426 | Pectinesterase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EAZ19254.1 | 0 | 39 | 411 | 83 | 426 | hypothetical protein OsJ_34791 [Oryza sativa Japonica Group] |
| RefSeq | NP_001068465.1 | 0 | 39 | 411 | 3 | 346 | Os11g0683800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001131452.1 | 0 | 61 | 411 | 55 | 395 | hypothetical protein LOC100192787 [Zea mays] |
| RefSeq | XP_002454803.1 | 0 | 24 | 414 | 24 | 414 | hypothetical protein SORBIDRAFT_04g037730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2nt9_B | 0.000000000000003 | 95 | 287 | 9 | 197 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
| PDB | 2nt9_A | 0.000000000000003 | 95 | 287 | 9 | 197 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
| PDB | 2nt6_B | 0.000000000000003 | 95 | 287 | 9 | 197 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
| PDB | 2nt6_A | 0.000000000000003 | 95 | 287 | 9 | 197 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
| PDB | 2nst_B | 0.000000000000003 | 95 | 287 | 9 | 197 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
