| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g037740.1 |
| Family | CE8 |
| Protein Properties | Length: 381 Molecular Weight: 41341.8 Isoelectric Point: 7.8804 |
| Chromosome | Chromosome/Scaffold: 4 Start: 67304017 End: 67305870 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 51 | 359 | 0 |
| HGTIGEALKDEAAALRVTTGAKKGHVPRLVILITAGEYKEQVHITRRNVVLLGEGRGKTIISGNLSNRTGTEMYMTATVNALGHGFVAQNLTILNSAGPD GKQAVALRSNSHRSVVYGCSIEGYEDTLYAENGAQVYLDTDIYGTVDFVFGNARAVFQRCRIRVREPLSGKHNVITAQGCNNKTYQDSGFVFHRCTVEAD PNPIRDPVSGEPIGFQNLTGVETYLGRPHRNFSHVVFMQSELGAIVHTDGWVAWDKNHVIKETTESVKYLEFNNTGAGADTARRVNWTGVQVIHDAAQVT KYCIDNFVA | |||
| Full Sequence |
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| Protein Sequence Length: 381 Download |
| MAAGGRWSLA ALALVAMAVV SAAETWPPAP HAVVARKRPG DCRGVADAHC HGTIGEALKD 60 EAAALRVTTG AKKGHVPRLV ILITAGEYKE QVHITRRNVV LLGEGRGKTI ISGNLSNRTG 120 TEMYMTATVN ALGHGFVAQN LTILNSAGPD GKQAVALRSN SHRSVVYGCS IEGYEDTLYA 180 ENGAQVYLDT DIYGTVDFVF GNARAVFQRC RIRVREPLSG KHNVITAQGC NNKTYQDSGF 240 VFHRCTVEAD PNPIRDPVSG EPIGFQNLTG VETYLGRPHR NFSHVVFMQS ELGAIVHTDG 300 WVAWDKNHVI KETTESVKYL EFNNTGAGAD TARRVNWTGV QVIHDAAQVT KYCIDNFVAG 360 KEWIPQQIPY DHEIPRGIVV * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02745 | PLN02745 | 5.0e-79 | 28 | 364 | 339 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 6.0e-82 | 53 | 370 | 323 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02170 | PLN02170 | 2.0e-83 | 30 | 365 | 338 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 5.0e-85 | 28 | 371 | 347 | + pectinesterase | ||
| pfam01095 | Pectinesterase | 3.0e-103 | 31 | 360 | 332 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA94334.1 | 0 | 80 | 370 | 91 | 366 | Pectinesterase family protein [Oryza sativa (japonica cultivar-group)] |
| GenBank | EAY80256.1 | 0 | 59 | 372 | 68 | 380 | hypothetical protein OsI_35428 [Oryza sativa Indica Group] |
| GenBank | EAY81365.1 | 0 | 80 | 370 | 91 | 366 | hypothetical protein OsI_36536 [Oryza sativa Indica Group] |
| GenBank | EEE51795.1 | 0 | 19 | 378 | 36 | 386 | hypothetical protein OsJ_33254 [Oryza sativa Japonica Group] |
| RefSeq | XP_002453066.1 | 0 | 1 | 380 | 1 | 380 | hypothetical protein SORBIDRAFT_04g037740 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 30 | 364 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 78 | 364 | 32 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 4e-17 | 55 | 251 | 41 | 256 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.000000000000002 | 42 | 333 | 9 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.000000000000002 | 42 | 333 | 9 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
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| Start | End | ||||
| 7 | 29 | ||||
| Signal Peptide | |||||
|---|---|---|---|---|---|
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| Cleavage Site | |||||
| 23 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EC939603 | 296 | 78 | 370 | 0 |
| FY428266 | 278 | 95 | 370 | 0 |
| EL419338 | 287 | 80 | 366 | 0 |
| FY433569 | 330 | 30 | 357 | 0 |
| JK801802 | 276 | 86 | 357 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Oryza sativa | LOC_Os08g12410.1 | LOC_Os11g36240.1 | |||
| Panicum virgatum | Pavirv00057340m | ||||
| Setaria italica | Si022417m | Si019968m | Si025266m.144.297 | Si025266m.144.297 | |
| Sorghum bicolor | Sb05g000900.1 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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